Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0898 ATGAGAAACTCCAGACCCATCATTCTGTTTCCCTTGCTTTGCTTTCTCTCCTCCACCATCTCAATCTTATGTGACCCAAACCCTTTGGTTTGCAATGAAAAAGAGAAACATGCCCTTCTAAGATTCAAGAAATCTCTCTCTGATCCTGGCAACCGGCTCTTGCCTTGGTCTGTCAATCAAGATTGTTGTAGATGGGAAGCAGTTCGCTGCAACAACGTTACAGGGCGAGTGGTTGAGCTCCATCTCGGTAATCCATATGACACGGATGATTTAGAATTCAATAGCAAGTTCGAGTTGGGTGGTGAGATTAGCCCTGCTTTGCTTGAATTAGAATTTTTGAGTTACTTGAACTTGAGTGGGAATGATTTTGGAGGTAGTCCAATTCCAAGTTTCCTGGGTTCCATGGGGAGTTTGAGATATCTTGACCTCTCCTATGCTGGATTTGGTGGACTAGTTCTTCATCAGCTCGGAAATCTCTCGACTCTTCGTCACCTGGATCTGGGAGGTAACAGTGGGCTGTACGTTGAGAATCTTGGTTGGATTTCTCATCTTGCTTTTTTGAAGTACCTAGGCATGGATTGGGTCGACCTTCACAGGGAAGTCCATTGGCTTGAATCCGTGTCTATGCTCCCTTCTCTCCTAGAGCTGCACTTGTCCGAATGTGAACTTGATAGCAATATGACTTCATCTCTCGGGTATGCCAATTTCACATCTCTCACATTTCTTGATCTTTCTAACAACAATTTCAATCAAGAAATACCAAATTGGTTGTTTAATCTCAGTAGTCTTGTGTCTTTAAGTCTATCAAACAATCAATTCAAGGGGCAAATTTCAGAGTCTTTTGGACAACTCAAATATCTAGAATCTCTCTTTGTTTCTGCTAATTCCTTTCATGGCCCTATTCCTACATCCATAGGAAACTTATCATCCTTGAGGTATTTGAGTCTTTCTGGAAATCCGTTGATTAATGGCACTCTTCCAATGAGTCTGTGGTTTCTATCCAATTTGGAGAATTTAAATGTAGGAGGGACTTCCTTAACAGGGACCATATCAGAAGTACATTTTACAGCACTCTCAAAATTGAAGGTCTTATCGATATCTGGAACATCTTTATCTTTCCATGTGAACTCCAGTTGGACTCCTCCATTCCAACTAGAGTATCTGGACGCGGATTCCTGTAAAATGGGTCCAAAATTTCCTGCGTGGCTACAGACACAAAAGTCTCTTTTCTATCTAGACTTCTCCAGGTCTGGAATTGTGGACACAGCTCCAAACTGGTTCTGGAAGTTCGCTTCATACATCCAACAGATCCATCTCTCTAACAACCAGATATCTGGGGACTTATCCCAAGTTGTACTAAATAATACTATCATTGATTTGAGTTCTAATTGCTTCTCAGGTCGGTTGCCACGTCTGTCTCCGAATGTTGTTGTGTTGAATATTGCTAACAATTCATTCTCGGGACAGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAAGAAGTAAATTGGAGGTCGTTGACATTTCAATTAATGTTTTATCAGGGGAACTTTCTGATTGTTGGATGCATTGGCCGTCTCTTACTCATGTAAGCCTGGGAAGCAACAATCTATCTGGTAAAATTCCTAATTCCATGGGTTCTTTGGTCGGACTTGAAGCATTGAGCTTGGAAAACAATTCATTCTATGGAGAAATACCCTCATCACTAGAGAATTGCAAGGTTTTGGGGCTGATAAATCTAAGTGATAATAAATTTTCGGGGATTATACCCAGGTGGATTTTTGAGAGGACAACTCTAATTATTATCCACTTAAGATCCAATAAATTCATGGGCAAAATTCCTCCACAAATATGCCAACTTTCTTCTCTTATAGTGTTGGATCTTGCTGATAATAGTCTGTCAGGATCAATACCCAAGTGCTTGAATAATATCAGTGCGATGACTGCAGGACCTATCCGGGGTATTTGGTATGATGCTTTGGAAGCAGATTATGATTATGAATCTTACATGGAAAGTCTTGTTTTAGATATAAAGGGGAGGGAAGCAGAGTACGAAAAGATTCTTAAATATGTAAGGATGATTGACCTTTCAAGTAACAATTTATCTGGATCAATCCCAATTGAAATCTCAAGTCTTGTTGGACTGCAATTTCTAAACTTATCTCGAAATCATTTAATGGGAAGGATACCAAAGAAAATTGGGGTGATGGCATCATTAGAATCTCTAGATCTCTCGAGAAATCATCTTTCAGGTGAAATTCCTCAGAGCATGAGCAATTTAACATTTCTTGATGACCTGGACCTGTCATTCAACAACTTTTCTGGGAGAATTCCTTCAAGCACCCAGCTTCAAAGCTTCGATCCACTTTCTTTCTTTGGCAATCCTGAACTGTGTGGAGCCCCTCTTACGAAAAACTGCACAAAAGATGAAGAGACTCTAGGTCCCACTGCTGTAGAAGAAAACAGAGAATTTCCTGAAATCTCATGGTTTTACATCGGCATGGGATCAGGATTCATTGTGGGGTTTTGGGGAGTTTGTGGAGCTCTCTTTTTCAAGAGAGCATGGAGGTATGCTTATTTCCAGTTTCTTTATGACATCAGGGACCGGGCCTATGTGGCTATACCAATAAAACTGAAGTGGTTCCACCAAAAGTTGAGAAGATACCATGCTGGTAAGGAAAAGATATATGATTACCCTTATTTTCAAATCATATACTGA 2721 0.4043 MRNSRPIILFPLLCFLSSTISILCDPNPLVCNEKEKHALLRFKKSLSDPGNRLLPWSVNQDCCRWEAVRCNNVTGRVVELHLGNPYDTDDLEFNSKFELGGEISPALLELEFLSYLNLSGNDFGGSPIPSFLGSMGSLRYLDLSYAGFGGLVLHQLGNLSTLRHLDLGGNSGLYVENLGWISHLAFLKYLGMDWVDLHREVHWLESVSMLPSLLELHLSECELDSNMTSSLGYANFTSLTFLDLSNNNFNQEIPNWLFNLSSLVSLSLSNNQFKGQISESFGQLKYLESLFVSANSFHGPIPTSIGNLSSLRYLSLSGNPLINGTLPMSLWFLSNLENLNVGGTSLTGTISEVHFTALSKLKVLSISGTSLSFHVNSSWTPPFQLEYLDADSCKMGPKFPAWLQTQKSLFYLDFSRSGIVDTAPNWFWKFASYIQQIHLSNNQISGDLSQVVLNNTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGQISPFMCQKMNGRSKLEVVDISINVLSGELSDCWMHWPSLTHVSLGSNNLSGKIPNSMGSLVGLEALSLENNSFYGEIPSSLENCKVLGLINLSDNKFSGIIPRWIFERTTLIIIHLRSNKFMGKIPPQICQLSSLIVLDLADNSLSGSIPKCLNNISAMTAGPIRGIWYDALEADYDYESYMESLVLDIKGREAEYEKILKYVRMIDLSSNNLSGSIPIEISSLVGLQFLNLSRNHLMGRIPKKIGVMASLESLDLSRNHLSGEIPQSMSNLTFLDDLDLSFNNFSGRIPSSTQLQSFDPLSFFGNPELCGAPLTKNCTKDEETLGPTAVEENREFPEISWFYIGMGSGFIVGFWGVCGALFFKRAWRYAYFQFLYDIRDRAYVAIPIKLKWFHQKLRRYHAGKEKIYDYPYFQIIY* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0898 906 SUPERFAMILY RNI-like 106 467 - -
Vvi16g0898 906 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 685 807 - -
Vvi16g0898 906 Gene3D Ribonuclease Inhibitor 215 353 IPR032675 -
Vvi16g0898 906 Pfam Leucine Rich Repeat 739 761 IPR001611 GO:0005515
Vvi16g0898 906 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 180 453 - -
Vvi16g0898 906 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 454 653 - -
Vvi16g0898 906 SUPERFAMILY L domain-like 456 803 - -
Vvi16g0898 906 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi16g0898 906 SMART LRR_typ_2 549 573 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 713 735 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 621 644 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 210 234 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 308 333 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 110 135 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 737 761 IPR003591 -
Vvi16g0898 906 SMART LRR_typ_2 236 260 IPR003591 -
Vvi16g0898 906 Gene3D Ribonuclease Inhibitor 31 207 IPR032675 -
Vvi16g0898 906 PANTHER LRR RECEPTOR-LIKE KINASE 239 321 - -
Vvi16g0898 906 Gene3D Ribonuclease Inhibitor 354 810 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0898 Vvi-Chr16 17105351 17108071 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0898 12 807 Receptor kinase-like Gene Family AT4G13920 32.110 2.24e-94 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0898 - - vvi:100261929 1768.82