Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0897 ATGCGTGAAATCTTGCATGTTCAGGGTGGGCAATGTGGGAACCAGATCGGAGCCAAGTTCTGGGAGGTGGTCTGCGCTGAGCACGACATCGACTCCACCGGGCGCTACCAAGGCGACACGGAGCTACAACTGGAGCGAGTCAATGTGTACTACAACGAGGCGAGTTGTGGGAGGCTCGTGCCCAGGGCAGTGCTCATGGATCTGGAGCCGGGCACCATGGACAGCGTCAGATCGGGACCGTACGGCCAGATTTTTCGACCTGATAATTTTGTTTTTGGGCAGTCGGGTGCGGGCAACAACTGGGCCAAAGGTCGCCACTCTTTGGGAGGTGGAACTGGGTCAGGCATGGGAACACTCCTCATTTCCAAGATCAGAGAAGAATACCCGGATCAAATGATGCTCACATTCTCTGTATTCCCTTCTGCTAAGGCCTCTGATACTGTTGTTGAGCCTTATTAA 459 0.5425 MREILHVQGGQCGNQIGAKFWEVVCAEHDIDSTGRYQGDTELQLERVNVYYNEASCGRLVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGRHSLGGGTGSGMGTLLISKIREEYPDQMMLTFSVFPSAKASDTVVEPY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0897 152 FunFam tubulin beta-4A chain isoform X5 1 130 - -
Vvi16g0897 152 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 109 115 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi16g0897 152 Pfam Tubulin/FtsZ family, GTPase domain 3 109 IPR003008 GO:0005525
Vvi16g0897 152 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g0897 152 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g0897 152 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 152 IPR036525 -
Vvi16g0897 152 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Vvi16g0897 152 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vvi16g0897 152 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi16g0897 152 SMART Tubulin_4 47 152 IPR003008 GO:0005525
Vvi16g0897 152 Gene3D Tubulin/FtsZ, GTPase domain 107 152 IPR036525 -
Vvi16g0897 152 Gene3D Tubulin/FtsZ, GTPase domain 1 106 IPR036525 -
Vvi16g0897 152 PANTHER TUBULIN 106 152 IPR000217 GO:0005874|GO:0007017
Vvi16g0897 152 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0897 Vvi-Chr16 17083228 17084154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0897 K07375 - vvi:100261736 281.952