Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0896 ATGAGAAACTCCAGACCCATCATTTTGTTTCCCTTGCTTTGCTTTCTCTCCTCCACCATCTCAATCTTATGTGACCCAAACACTTTGGTTTGCAATGAAAAAGAGAAACATGCCCTTCTAAGATTCAAGAAAGCTCTCTCTAATCCTGGCAACCGGCTCTCATCTTGGTCTGTCAATCAAGATTGTTGTAGATGGGAAGCAGTTCGCTGCAACAACGTTACAGGGCGAGTGGTTGAGCTCCATCTCGGTAATCCATATGACGCGGATGATTATGAATTCTATAGATTGGGTGGTGAAATTAGCCCTGCTTTGCTTGAATTAGAATTTTTGAGTTACTTGAACTTGAGTTGGAATGATTTTGGAGGTAGTCCAATTCCAAGTTTCCTGGGTTCCATGGGGAGTTTGAGATATCTTGACCTCACCTCTGTTGGATTTGGTGGACTAGTCCCTCATCAGCTTGGAAATCTCTCGACTCTTCGTCACCTGGATCTGGGATATAACAATGGGTTGTACGTTGAGAATCTTGGTTGGATTTCTCATCTTGCTTTTTTGAAGTACCTAGGCATGAATGGGGTTGACCTTCACAGGGAAGTCCATTGGCTTGAATCCGTGTCTATGTTCCCTTCTCTTTCAGAGCTGCACTTGTCCGATTGTGAACTTAATAGCAATAAAACTTCATCTTTCGGGTATGCCAATTTCACATCTCTCACATTTCTTGATCTTTCTGAGAACAATTTCAATCAAGAAATACCAAATTGGTTGTTTAATCTCAGTAGTCTTGTGTCTCTAAGTCTATTAGACAATCAATTCAAGGGGCAAATTTCAGAGTCTTTAGGACAACTCAAATATCTAGAATATCTCGATGTTTCTTTCAATTCCTTTCATGGCCCTATTCCTACATCCATAGGAAACTTATCATCCTTGAGGTCTTTGGGTCTTTCTGAAAATCAGTTGATTAATGGCACTCTTCCAATGAGTCTGTGGTTTCTATCCAATTTGGAGAATTTAAATGTACGAGGGACTTCCTTAACAGGGACCATATCAGAAGTACATTTTACAGCACTCTCAAAATTGAAGGACTTATTGATATCTGGAACATCTTTATCTTTCCATGTGAACTCCAGTTGGACTCCTCCATTCCAACTAGAGTATCTGGAGGCGGATTCCTGTAAAATGGGTCCAAAATTTCCTGCGTGGCTACAGACACAAAAGTCTCTTTTCTGTCTAGACGTCTCCAGGTCTGGAATTGTGGACACAGCTCCAAACTGGTTCTGGAAGTTCGCTTCATACATCGAACAGATCCATCTCTCTAACAACCAGATATCTGGGGACTTATCCCAAGTTGTACTAAATAATACTATCATTGATTTGAGTTCTAACTGCTTCTCAGGTCGGTTGCCACGTCTGTCTCCGAATGTTGTTGTGTTGAATATTGCTAACAATTCATTCTCGGGACAGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAAGAAGTAAATTGGAGGTCGTTGACATATCAATTAATGCTTTATCAGGGGAACTTTCTGATTGTTGGATGCATTGGTCGTCTCTTACTCATGTAAGCCTGGGAAGCAACAATCTATCTGGTAAAATTCCTAATTCCATGGGTTCTTTGGTCGGACTTAAAGCATTGAGCTTGCAAAACAATTCATTCTATGGAGAAATACCCTCATCACTAGAGAATTGCAAGGTTTTGGGGCTGATAAATCTAAGTGACAATAAATTTTCGGGGATTATACCCAGGTGGATTTTTGAGAGGACAACTCTAATGGTTATCCATTTAAGATCCAATAAATTCAACGGGCATTATTCCTCCACAAATATGCCAACTTTCTTCTCTTATAGTGTTGGATCTTGCTGA 1884 0.4039 MRNSRPIILFPLLCFLSSTISILCDPNTLVCNEKEKHALLRFKKALSNPGNRLSSWSVNQDCCRWEAVRCNNVTGRVVELHLGNPYDADDYEFYRLGGEISPALLELEFLSYLNLSWNDFGGSPIPSFLGSMGSLRYLDLTSVGFGGLVPHQLGNLSTLRHLDLGYNNGLYVENLGWISHLAFLKYLGMNGVDLHREVHWLESVSMFPSLSELHLSDCELNSNKTSSFGYANFTSLTFLDLSENNFNQEIPNWLFNLSSLVSLSLLDNQFKGQISESLGQLKYLEYLDVSFNSFHGPIPTSIGNLSSLRSLGLSENQLINGTLPMSLWFLSNLENLNVRGTSLTGTISEVHFTALSKLKDLLISGTSLSFHVNSSWTPPFQLEYLEADSCKMGPKFPAWLQTQKSLFCLDVSRSGIVDTAPNWFWKFASYIEQIHLSNNQISGDLSQVVLNNTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGQISPFMCQKMNGRSKLEVVDISINALSGELSDCWMHWSSLTHVSLGSNNLSGKIPNSMGSLVGLKALSLQNNSFYGEIPSSLENCKVLGLINLSDNKFSGIIPRWIFERTTLMVIHLRSNKFNGHYSSTNMPTFFSYSVGSC* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0896 627 SUPERFAMILY L domain-like 395 612 - -
Vvi16g0896 627 Gene3D Ribonuclease Inhibitor 211 350 IPR032675 -
Vvi16g0896 627 Gene3D Ribonuclease Inhibitor 351 620 IPR032675 -
Vvi16g0896 627 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 178 454 - -
Vvi16g0896 627 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi16g0896 627 SUPERFAMILY RNI-like 113 460 - -
Vvi16g0896 627 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 517 611 - -
Vvi16g0896 627 Pfam Leucine Rich Repeat 110 129 IPR001611 GO:0005515
Vvi16g0896 627 Gene3D Ribonuclease Inhibitor 31 203 IPR032675 -
Vvi16g0896 627 PANTHER LRR RECEPTOR-LIKE KINASE 235 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0896 Vvi-Chr16 17053735 17055618 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0896 212 619 Receptor kinase-like Gene Family AT4G13920 27.273 1.17e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0896 - - vvi:104882200 1244.57