Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0891 ATGAGAAAATTGAAAGCAATTCTAGGTGTTCTCTTGCTTTGGTTTCTGTGCTCAACAATTTTAAGGTCATGCAGGGCAAACAACTTGGTTTGTAATGAAAAGGAGAAACAAGCCCTTCTGAGCTTCAAACACGCTCTTCTTCACCCTGCAAACCAGCTGTCTTCTTGGTCTATTAAAGAAGACTGTTGTGGATGGCGAGGAGTCCACTGTAGCAATGTGACTGCTCGAGTTCTCAAGCTCGAACTGGCTGATATGAATTTGGGAGATAATCAATTCAAGGGGCAAATTCCAGAGTCCTTGGGGCACTTCAAATATCTAGAATATCTTGATCTTTCTTCTAATTCCTTTCATGGCCCTATTCCTACATCCATAGGAAACTTATCCTCCTTGAGGGAATTAAATCTTTATTATAATCGGTTAAATGGTACTCTTCCTACGAGTATGGGGCGTCTTTCAAATTTGATGGCCTTGGCTCTGGGACATGACTCCTTGACCGGTGCTATATCAGAAGCACATTTTACAACACTTTCAAACTTGAAGACAGTACAGATATCAGAGACATCCTTATTTTTCAATGTGAAATCCAATTGGACTCCTCCTTTTCAGCTTCAATTTCTGTTAATTTCTTCTTGCAAGATAGGTCCCAAGTTTCCGGCATGGCTGCAGACCCAAAAGTCTCTTTCCTATCTAGACTTTTCCGCGTCAGGAATTGAGGACACAGCTCCGAACTGGTTCTGGAAGTTCGCCTCATACATCCAACAGATCCATCTCTCTAATAACCAGATATCTGGGGACTTACTCCAAGTTGTACTAAACAATGCTATCATCGATTTGAGTTCTAATTGCTTCTCAGGTCGGTTACCATGTCTCTCTCCGAATGTTGTTGTGTTGAATATTGCTAACAATTCATTTTCGGGACCGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAACAAGTCAATTGGAGGTCCTTGACATATCAATTAATGCTTTATCCGGGGAAATTTCTGATTGTTGGATGCATTGGCAATCTCTTACTCATATAAATATGGGAAGCAACAATCTATCTGGTAAAATCCCCAATTCCATGGGTTCTTTGGTTGGACTTAAAGCATTGAGCTTGCACAACAATTCCTTCTATGGAGATGTACCTTCATCACTAGAGAACTGCAAGGTTTTGGGGCTGATAAATCTAAGTGACAATAAATTTTCGGGGATTATACCCAGGTGGATTGTTGAGAGGACAACTGTAATGGTTATCCATTTAAGAACCAATAAATTCAACGGCATTATTCCTCCACAAATATGTCAACTTTCTTCTCTTATAGTATTGGATTTAGCTGATAATAGTCTATCAGGAGAGATACCGAAGTGCTTGAATAATTTCAGTGCTATGGCTGAAGGACCTATCCGGGGTCAGTATGATATTTTGTATGATGCTTTGGAAGCAGAGTATGATTATGAATCTTACATGGAAAGTCTTGTTTTAGATATAAAGGGGAGGGAATCAGAGTATAAAGAGATTCTTAAATATGTTAGGGCCATCGACCTTTCAAGTAACAATTTATCAGGATCAATCCCAGTTGAAATCTTTAGTCTCTCCGGATTGCAACTTCTAAACTTATCTTGCAATCATTTAAGGGGAATGATATCAGCGAAAATTGGAGGCATGGAATACTTAGAATCTTTGGATCTCTCTAGAAACCATCTTTCAGGTGAAATTCCTCAAAGCATTGCCAATTTAACATTTCTTAGTTATCTGAACGTGTCGTACAACAAATTTTCTGGAAAAATTCCTTCAAGTACCCAGCTTCAAAGCTTGGATCCACTTTATTTCTTTGGCAATGCTGAACTGTGTGGAGCTCCTCTTTCGAAAAATTGCACAAAAGATGAAGAGCCTCAAGATACAAACACCAATGAAGAAAGTGGAGAACATCCTGAAATCGCATGGTTTTACATTGGCATGGGAACAGGATTTGTTGTGGGGTTCTGGGGAGTTTGTGGAGCTCTCTTTTTCAAAAGATCTTGGAGGCATGCTTATTTTCGGGTTCTTGATGACATGAAAGACAGGGTCTATGTGGTTATAGCATTAAGATTTACGATGTTTAAGGGGTCGCAGCGAAAGAGAGAAGGTAATGGATGGTGGTGGAACTTGAAGAAACTGGGGAAAACATTCCAGGGAGCACATAACCTCATCAAGTTGTACGAGGCAGGAATTGTGGACACAGCTCCAAAGTGGTTCTGGAAGTGGGCTTCACATCTTCAAACTATCAATCTTGATCATAACCAGATAAGTGGAGATTTATCCCAAGTTCTGCTAAATAGTACTATCTTCTCTATAAATTCTAATTGCTTCACGGGTCAATTACCACATTTGTCACCAAATGTTGTTGCGTTGCGTATGTCCAATAATTCATTATCCGGACAGATTTCCTCTTTCTTGTGCCAAAAGATGAATGGAAGAAGCAAACTGGAGATACTCTACATACCATATAACGCTTTGTCAGGGGAACTTCCTCATTGTTTGCTGCACTGGCAATCTTTGACTCATTTAAACTTGGGAAGCAACAATCTATCAGGTAAAATTCCTGAATTGATTGGCTCTTTATTTTCTCTCAAGGCATTGCATTTGCACAATAATAGCTTTTCAGGAGGTATACCATTGTCACTCAGAAACTGCACATTTTTGGGCCTCATAGATTTTGCTGGAAATAAACTTACCGGAAACATACCTAGCTGGATAGGAGAAAGAACACATCTAATGGTTCTACGGTTAAGATCCAATGAATTCTTTGGGGATATTCCTCCACAGATATGCCGACTTTCTTCTCTTATAGTATTGGATCTTGCTGATAACAGGTTATCTGGATTCATACCGAAGTGCTTGAAAAATATCAGTGCAATGGCTACAAGTCCCAGTCCAATTGATGATAAATTTAATGCTTTAAAATATCATATAATTTACATTCGATACACAGAGAATATTTTGTTGGTCATTAAAGGCAGGGAATCAAGATACGGTAGTATCCTTCCATTAGTGAGGATAGTCGACCTTTCAAGTAACAATTTGTCAGGAGGAATCCCTTCTGAAATCTATAGTCTTTTTGGATTGCAGTCTTTGAACTTGTCTCGAAATAATTTAATGGGAAGGATGCCAGAGAAAATCGGGGTTATTGGATATTTAGAGTCTCTAGATCTCTCGAACAACCATCTTTCGGGTGAAATTCCTCAAAGCATCATTAATTTGACATTTCTTAGTCACTTGGACTTGTCATACAACAATTTCTCTGGAAGAATTCCTTCAAGCACACAGCTTCAGAGCTTTGATGCTCTTGATTTCATTGGCAACCCTGAACTTTGTGGAGCTCCTCTCTTGAAAAACTGCACAGAGAATGAAAATCCGAATCCCAGTGATGAAAATGGAGACGGCTTCGAAAGATCATGGTTTTATATTGGTATGGGAACTGGATTCATAGTGAGCTTTTGGGGAGTCTGTGGTGCTCTTCTATGCAAGAGAGCTTGGAGGCATGCTTACTTCAAGTTCCTTGACAACATCAAAGACCGGGTTTATTTGGCGACAGTGCTAAAACTGAGCTGGCTCCGCTACCATTTCAGAAGATACCGCATCAATGTCCAAGGAGCTGCAAACAGGAAAGAATGGAGGAAAGAGGTAGTGGTGAATCTTAAGAAAAACATGTCCAGGGTGCAGTCCATACTTCAATGGCGTGGTGGAAAGATCTGTACTCAAGTGGAATGTACTTGGAATTGCAGTAATTTATCAACTTTATTGATGTTCTTGTTCATCATGATGTAG 3816 0.3962 MRKLKAILGVLLLWFLCSTILRSCRANNLVCNEKEKQALLSFKHALLHPANQLSSWSIKEDCCGWRGVHCSNVTARVLKLELADMNLGDNQFKGQIPESLGHFKYLEYLDLSSNSFHGPIPTSIGNLSSLRELNLYYNRLNGTLPTSMGRLSNLMALALGHDSLTGAISEAHFTTLSNLKTVQISETSLFFNVKSNWTPPFQLQFLLISSCKIGPKFPAWLQTQKSLSYLDFSASGIEDTAPNWFWKFASYIQQIHLSNNQISGDLLQVVLNNAIIDLSSNCFSGRLPCLSPNVVVLNIANNSFSGPISPFMCQKMNGTSQLEVLDISINALSGEISDCWMHWQSLTHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLENCKVLGLINLSDNKFSGIIPRWIVERTTVMVIHLRTNKFNGIIPPQICQLSSLIVLDLADNSLSGEIPKCLNNFSAMAEGPIRGQYDILYDALEAEYDYESYMESLVLDIKGRESEYKEILKYVRAIDLSSNNLSGSIPVEIFSLSGLQLLNLSCNHLRGMISAKIGGMEYLESLDLSRNHLSGEIPQSIANLTFLSYLNVSYNKFSGKIPSSTQLQSLDPLYFFGNAELCGAPLSKNCTKDEEPQDTNTNEESGEHPEIAWFYIGMGTGFVVGFWGVCGALFFKRSWRHAYFRVLDDMKDRVYVVIALRFTMFKGSQRKREGNGWWWNLKKLGKTFQGAHNLIKLYEAGIVDTAPKWFWKWASHLQTINLDHNQISGDLSQVLLNSTIFSINSNCFTGQLPHLSPNVVALRMSNNSLSGQISSFLCQKMNGRSKLEILYIPYNALSGELPHCLLHWQSLTHLNLGSNNLSGKIPELIGSLFSLKALHLHNNSFSGGIPLSLRNCTFLGLIDFAGNKLTGNIPSWIGERTHLMVLRLRSNEFFGDIPPQICRLSSLIVLDLADNRLSGFIPKCLKNISAMATSPSPIDDKFNALKYHIIYIRYTENILLVIKGRESRYGSILPLVRIVDLSSNNLSGGIPSEIYSLFGLQSLNLSRNNLMGRMPEKIGVIGYLESLDLSNNHLSGEIPQSIINLTFLSHLDLSYNNFSGRIPSSTQLQSFDALDFIGNPELCGAPLLKNCTENENPNPSDENGDGFERSWFYIGMGTGFIVSFWGVCGALLCKRAWRHAYFKFLDNIKDRVYLATVLKLSWLRYHFRRYRINVQGAANRKEWRKEVVVNLKKNMSRVQSILQWRGGKICTQVECTWNCSNLSTLLMFLFIMM* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0891 1271 SUPERFAMILY L domain-like 31 288 - -
Vvi16g0891 1271 ProSiteProfiles Leucine-rich repeat profile. 848 870 IPR001611 GO:0005515
Vvi16g0891 1271 FunFam Leucine-rich repeat receptor protein kinase EMS1 75 171 - -
Vvi16g0891 1271 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1008 1129 - -
Vvi16g0891 1271 SUPERFAMILY RNI-like 276 609 - -
Vvi16g0891 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 172 268 - -
Vvi16g0891 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 269 474 - -
Vvi16g0891 1271 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515
Vvi16g0891 1271 Pfam Leucine rich repeat 82 140 IPR001611 GO:0005515
Vvi16g0891 1271 Pfam Leucine rich repeat 321 379 IPR001611 GO:0005515
Vvi16g0891 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 725 972 - -
Vvi16g0891 1271 Gene3D Ribonuclease Inhibitor 172 631 IPR032675 -
Vvi16g0891 1271 Gene3D Ribonuclease Inhibitor 719 1133 IPR032675 -
Vvi16g0891 1271 Gene3D Ribonuclease Inhibitor 86 171 IPR032675 -
Vvi16g0891 1271 Gene3D Ribonuclease Inhibitor 27 85 IPR032675 -
Vvi16g0891 1271 SMART LRR_typ_2 1083 1106 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 870 898 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 367 391 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 127 151 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 558 586 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 510 534 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 942 965 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 439 463 IPR003591 -
Vvi16g0891 1271 SMART LRR_typ_2 1011 1035 IPR003591 -
Vvi16g0891 1271 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 505 628 - -
Vvi16g0891 1271 Pfam Leucine Rich Repeat 1062 1083 IPR001611 GO:0005515
Vvi16g0891 1271 Pfam Leucine Rich Repeat 848 870 IPR001611 GO:0005515
Vvi16g0891 1271 Pfam Leucine Rich Repeat 944 965 IPR001611 GO:0005515
Vvi16g0891 1271 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi16g0891 1271 SUPERFAMILY L domain-like 787 1126 - -
Vvi16g0891 1271 PANTHER LRR RECEPTOR-LIKE KINASE 31 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0891 Vvi-Chr16 17017538 17025694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0891 274 865 Receptor kinase-like Gene Family AT2G32660 23.724 6.10e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0891 - - vvi:100257448 1236.09