Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0889 ATGGTGTTTCTCTTGTTAGCCATCTTAAGCTTATGCAAACCAAACTCCTTGGCCTGCAATGAAAAGGAGAAACAGGCCCTTCTCCGCTTCAAACAAGCTCTCACCGATCCTGCAAACAGCCTCTCTTCTTGGTCTCTCACTGAAGACTGTTGTGGATGGGCAGGTGTCCGCTGCAACAACGTGTCTGGTCGCGTAGTTGAGCTCCATCTCGGTAATTCATACGACCCTTATGCTGTTAAATTCAATGGCAGGTCTGCTTTGGGAGGTGAGATTAGTCCTGCTTTGCTAGAGTTGGAACATTTGAATTTCTTGGATTTGAGCACAAATGATTTTGGAGGTGCTCCCATTCCTAGTTTCCTTGGCTCTATGAGGAGTCTAAGACATCTTGACCTCTGGGGTGCTTCATTTGGTGGCCTAATACCTCATCAGCTTGGAAATCTCTCAAGCCTTCGCCACCTTGACCTAGGAGGAAATTCTGGGCTTCATGTTGACAATTTTAGTTGGATTTCTCTTCTTTCTTCCTTGGTATCCTTGGACATGACTTGGATTGACCTTCACAGGGATGCTCATTGGCTTGATTCTGTAAGTCTGCTCGCTTCCCTTTCAGAGCTAATCTTGCCCAATTGTCAACTTAATAACATGATTTCATCACTTGGGTTTGTCAATTTTACATCTCTCACAGTCCTGTATCTTCCTTCTAACAACTTCAATCACAACATGCCAAGTTGGTTGTTTAATCTCAGTAGTCTTTCATCTCTGGACCTGAGTGACAATTCTCTACAGGGTCAGATTCCGAGCACCATATCAAATCTTCAGAACATACACTATCTAAATTTATCAGTCAATATGTTAACAGGGCAAATTCCAGACTCTTCAGGGCAGCTCAAACATCTAACACTTGTTTCACTTTTTTCTAATTTCTTATGTGGCCCTATTCCTTCACGGTTGGGAAACCTATCATCCTTGTCTCGGCTATATCTTGATCAAAATAAGTTAGATGGCTCTATTCCTTCCTCGTTGGGAAACCTATCATCCTTGTCTTACTTATATCTTTATAGTAATAAGTTAAATGGCACTGTTCCAAGGAATCTGGGACTTCTTTCAAATTTGGTGACACTTTACATCGCAAACAACTCCATAGAAGGAACAGTGTCGGAAGTACATTTTGCCAAACTCTCCAAGTTGAAGTACTTAGCCATGTCTTTTACATCTGTTGTATTCAATGTGAGCCATAACTGGATTCCTCCTTTTCAACTTGAATACTTAGGAATGGCTTTTTGCAAGATGGGTCCCAGGTTTCCTCTATGGCTACAAACACAAAGATCCCTTCAGATTTTAGAGTTGTTCGAGGCAGGAATTGTGGACACAGCTCCAAAGTGGTTCTGGAAGTGGGCTTCACATATTCAAATTATCAATCTTGGTTATAACCAGATAAGCGGAGATTTATCCCAAGTTCTGCTAAATAGTACTATCTTCTCTGTAGATTCTAATTGCTTCACGGGTCAACTACCACATTTGTCACCAAATGTTGTAGCGTTGGATATAGGCAATAATTCATTATCCGGACAGATTTCCTCTTTCTTGTGCCAAGAGATGAATGGAAGAAGCAAACTGGAGATGCTCTACATACCATATAACGCTTTGTCAGGGGAACTTCCTCATTGTTTGCTGCACTGGCAATCTTTGAGTCATTTAAACTTGGGAAGCAACAATCTATCAGGTAAAATTCCTGAATTGATTGGCTCTTTATTTTCTCTCAAGGCATTGCATTTGCACAATAATAGCTTTTCAGGAGGTATACCATTGTCACTCAGAAACTGCACATTTTTGGGCCTCATAGATTTTGGTGGAAATAAACTTACCGGAAACATACCTAGCTGGATAGGAGAAAGAACACATCTAATGGTTCTACGGTTAAGATCTAATGAATTCGTTGGGGATATTCCTCCACAGATATGCCGACTTTCTTCTCTTATAGTGTTGGATCTTGCTGATAACAGGTTGTCTGGATTCATACCAAAGTGCTTGAAAAATATCCGTGCAATGGCTACAGGTCCCAGTCCAATTGATGATAAATTTAATGCTTTAACAGATCATACAATTTACACTCCATACATAGAGGATCTTTTGTTGATCATTAAAGGCAGGGAATCAAGATACGGTAGTATCCTTCCATTAGTGAGGATAGTCGATCTTTCTAGTAACAATTTGTCAGGAGCAATCCCTTCTGAAATCTCTAGTCTTTTTGGATTGCAGTCTTTGAACTTCTCTCGAAATAATTTAATGGGAAGGATACCAGAGAAAATCGGGGTTATTGGATATTTAGAGTCTCTAGATCTCTCGAACAACCATCTTTCGGGTGAAATTCCTCAAAGCATCATTAATTTGACATTTCTTAGTCACTTGGACTTGTCATACAACAATTTCTCTGGAAGAATTCCTTCAAGCACACAGCTCCAGAGCTTTGATGCTCTTGATTTCATTGGCAACCCTGAACTTTGTGGAGCTCCTCTCTTGAAAAACTGCACAGAGAATGAAGATCCGAATCCCAGTGATGAAAATGGAGACGGCTTCGAAAGATCATGGTTTTATATTGGTATGGCAACTGGATTCATAGTGAGCTTTTGGGGAGTCTCTGGTGCTCTTCTATGCAAGAGAGCTTGGAGGCATGCTTACTTCAAGTTCCTTGACAACATCAAAGACCGGGTTTATTTGGCGACAGTGCTAAAATTGAGCTGGCTTCGCTACCATTTCAGAAGATACCGCATCAGTTTGAGATGTCCAAGGAGCTACAAACAGGAAAGAATGGAGGAAAGAGGTAGTGGTGAATCTTAA 2835 0.4088 MVFLLLAILSLCKPNSLACNEKEKQALLRFKQALTDPANSLSSWSLTEDCCGWAGVRCNNVSGRVVELHLGNSYDPYAVKFNGRSALGGEISPALLELEHLNFLDLSTNDFGGAPIPSFLGSMRSLRHLDLWGASFGGLIPHQLGNLSSLRHLDLGGNSGLHVDNFSWISLLSSLVSLDMTWIDLHRDAHWLDSVSLLASLSELILPNCQLNNMISSLGFVNFTSLTVLYLPSNNFNHNMPSWLFNLSSLSSLDLSDNSLQGQIPSTISNLQNIHYLNLSVNMLTGQIPDSSGQLKHLTLVSLFSNFLCGPIPSRLGNLSSLSRLYLDQNKLDGSIPSSLGNLSSLSYLYLYSNKLNGTVPRNLGLLSNLVTLYIANNSIEGTVSEVHFAKLSKLKYLAMSFTSVVFNVSHNWIPPFQLEYLGMAFCKMGPRFPLWLQTQRSLQILELFEAGIVDTAPKWFWKWASHIQIINLGYNQISGDLSQVLLNSTIFSVDSNCFTGQLPHLSPNVVALDIGNNSLSGQISSFLCQEMNGRSKLEMLYIPYNALSGELPHCLLHWQSLSHLNLGSNNLSGKIPELIGSLFSLKALHLHNNSFSGGIPLSLRNCTFLGLIDFGGNKLTGNIPSWIGERTHLMVLRLRSNEFVGDIPPQICRLSSLIVLDLADNRLSGFIPKCLKNIRAMATGPSPIDDKFNALTDHTIYTPYIEDLLLIIKGRESRYGSILPLVRIVDLSSNNLSGAIPSEISSLFGLQSLNFSRNNLMGRIPEKIGVIGYLESLDLSNNHLSGEIPQSIINLTFLSHLDLSYNNFSGRIPSSTQLQSFDALDFIGNPELCGAPLLKNCTENEDPNPSDENGDGFERSWFYIGMATGFIVSFWGVSGALLCKRAWRHAYFKFLDNIKDRVYLATVLKLSWLRYHFRRYRISLRCPRSYKQERMEERGSGES* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0889 944 SUPERFAMILY L domain-like 40 271 - -
Vvi16g0889 944 Gene3D Ribonuclease Inhibitor 193 387 IPR032675 -
Vvi16g0889 944 SMART LRR_typ_2 655 678 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 583 611 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 796 819 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 147 168 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 343 367 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 247 271 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 319 342 IPR003591 -
Vvi16g0889 944 SMART LRR_typ_2 724 748 IPR003591 -
Vvi16g0889 944 PANTHER LRR RECEPTOR-LIKE KINASE 253 339 - -
Vvi16g0889 944 SUPERFAMILY L domain-like 500 839 - -
Vvi16g0889 944 FunFam Tyrosine-sulfated glycopeptide receptor 1 610 847 - -
Vvi16g0889 944 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Vvi16g0889 944 SUPERFAMILY L domain-like 192 483 - -
Vvi16g0889 944 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 388 487 - -
Vvi16g0889 944 Gene3D Ribonuclease Inhibitor 19 192 IPR032675 -
Vvi16g0889 944 Gene3D Ribonuclease Inhibitor 388 846 IPR032675 -
Vvi16g0889 944 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 242 338 - -
Vvi16g0889 944 ProSiteProfiles Leucine-rich repeat profile. 561 583 IPR001611 GO:0005515
Vvi16g0889 944 SMART LRR_sd22_2 147 168 - -
Vvi16g0889 944 SMART LRR_sd22_2 247 273 - -
Vvi16g0889 944 SMART LRR_sd22_2 775 798 - -
Vvi16g0889 944 SMART LRR_sd22_2 655 681 - -
Vvi16g0889 944 SMART LRR_sd22_2 319 345 - -
Vvi16g0889 944 SMART LRR_sd22_2 367 389 - -
Vvi16g0889 944 Pfam Leucine Rich Repeat 657 678 IPR001611 GO:0005515
Vvi16g0889 944 Pfam Leucine Rich Repeat 775 796 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0889 Vvi-Chr16 17009235 17012208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0889 19 842 Receptor kinase-like Gene Family AT4G13920 32.118 3.52e-97 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0889 - - vvi:100267733 1822.36