Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0888 ATGAGAAAAGCAATTCGAGGTGTTCTTTTGCTTTGGTTTCTGTGCTCAACAATTTTAAGGTCATGCAGGGCAAACAACTTGGTTTGTAATGAAAAGGAGAAACAAGCCCTTCTGAGCTTCAAACACGCTCTTCTTGACCCTGCAAACCAGCTGTCTTCTTGGTCTATTAAAGAAGACTGTTGTGGATGGCGAGGAGTCCACTGCAGCAATGTCACTGCTCGAGTTCTCAAGCTCGAACTTGCTGAAATGAATTTGGGAGGTGAGATTAGTCCTGCTTTACTCAAATTAGAATTTTTGGATCACTTAGACTTGAGCTCGAATGATTTTAAAGGTTCTCCAATTCCAAGTTTCCTGGGTTCCATGGGGAGTTTGAGATATCTTAACCTCAACGATGCTCGATTTGCTGGACTAGTTCCTCATCAGCTTGGAAATCTCTCGACTCTTCGTCACCTGGATCTGGGATATAACAGCGGGCTGTACGTTGAGAATCTTGGTTGGATTTCTCATCTTGCTTTTTTGAAGTACCTAAGCATGGATTCGGTCGACCTTCACAGGGAAGTCCATTGGCTTGAATCCGTGTCTATGTTCCCTTCTCTTTCAGAGCTGCACTTGTCCGAATGTAAACTTGATAGCAATATGACTTCATCTCTTGGGTATGACAATTTCACATCTCTCACATTTCTTGATCTTTCAGAGAACAAAATCAATCAAGAAATGCCAAATTGGTTGTTTAATCTCAGTAGTCTTGCTTTTTTAAGTCTATCAGAAAATCAATTCAAGGGGCAAATTCCAGAGTCCTTGGGGCACTTCAAATATCTAGAATATCTTGATCTTTCTTTTAATTCCTTTCATGGTCCTATTCCTACATCCATAGGAAACTTATCCTCCTTGAGGGAATTAAATCTTTATTATAATCGATTAAATGGTACTCTTCCTACGAGTATGGGGCGTCTTTCAAATTTGATGGCCTTGGCTCTGGGATATGACTCTATGACCGGTGCTATATCAGAAGCACATTTTACAACACTTTCAAAATTGGAGACAGTACAGATATCAGAGACATCCTTCTTTTTCAATGTGAAATCCAACTGGACTCCTCCTTTTCAGCTTCAATTTCTGTTAATTTCTTCCTGCAAGATAGGTCCCAAGTTTCCGGCATGGCTACAGACCCAAAAGTCTCTTTCCTATCTAGACTTTTCCAGGTCAGGAATTGAGGACACAGCTCCCAACTGGTTCTGGAAGTTCGCTTCATACATCGATCAGATCCATCTCTCTAATAATCGGATATCTGGGGACTTACCCCAAGTTGTACTAAACAATACTATCATCGATTTGAGTTCTAATTGCTTCTCAGGTCGGTTGCCACGTCTCTCTCCGAATGTTGTTGTGTTGAATATTGCTAACAATTCATTTTCGGGACCGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAACAAGTAAATTGGAGGTCCTTGACATATCAACTAATGCTTTATCAGGGGAAATTTCTGATTGTTGGATGCATTGGCAATCTCTTATTCATATAAATATGGGAAGCAACAATCTATCTGGTAAAATCCCCAATTCCATGGGTTCTTTGGTTGGACTTAAAGCATTGAGCTTGCACAACAATTCCTTCTATGGAGATGTACCTTCATCACTAGAGAACTGCAAGGTTTTGGGGCTGATAAATCTAAGTGACAATAAATTTTCAGGGATTATACCCAGGTGGATTGTTGAGAGGACAACTCTAATGGTTATCCATTTAAGATCCAATAAATTCAACGGCATTATTCCTCCACAAATATGCCAACTTTCTTCTCTTATAGTATTGGATTTCGCTGATAATAATCTATCAGGAGAGATACCGAAGTGCTTGAATAATTTCAGTGCTATGGCTGAAGGACCTATCCGGGGTCAGTATGATATTTGGTATGATGCTTTGGAAGTAAAGTACGATTATGAATCTTACATGGAAAGTCTTGTTTTAGATATAAAGGGGAGGGAATCAGAGTATAAAGAGATTCTTAAATATGTTAGGGCCATCGACCTTTCAAGTAACAATTTATCAGGATCAATCCCAGTTGAAATCTTTAGTCTCTCCGGATTGCAATTTCTAAACTTATCTTGCAATCATTTAAGGGGAATGATATCAGCGAAAATTGGAGGCATGGAATACTTAGAATCTTTGGATCTCTCTAGAAACCGTCTTTCAGGTGAAATTCCTCAAAGCATTGCCAATTTAACATTTCTTAGTTATCTGAACGTGTCGTACAACAATTTTTCTGGAAGAATTCCTTCAAGCACCCAGCTTCAAAGCTTGGATCCGCTTTCTTTCTTTGGCAATGCTGAACTGTGTGGAGCCCCTCTTACGAAAAACTGCACAAAAGATGAAGAGCCTCAAGATACAAACACCGATGAAGAAAGTAGAGAACATCCTGAAATCGCATGGTTTTACATTGGCATGGGAACAGGATTTGTTGTGGGGTTCTGGGGAGTTTGTGGAGCCCTCTTTTTCAAAAGAGCTTGGAGGCATGCTTATTTTCGGGTTCTTGATGACATGAAAGACAGGGTCTATGTGGTTATAGCATTAAGGTTGAAATGGTTGCAAAACAACCTGAGAAGATACTTTCTCGATTTACGATGTTTAAGGGGTCGCAGCGAAAGAGAGAAGGTAATGGATGGTGGTGGAACCTGA 2700 0.4004 MRKAIRGVLLLWFLCSTILRSCRANNLVCNEKEKQALLSFKHALLDPANQLSSWSIKEDCCGWRGVHCSNVTARVLKLELAEMNLGGEISPALLKLEFLDHLDLSSNDFKGSPIPSFLGSMGSLRYLNLNDARFAGLVPHQLGNLSTLRHLDLGYNSGLYVENLGWISHLAFLKYLSMDSVDLHREVHWLESVSMFPSLSELHLSECKLDSNMTSSLGYDNFTSLTFLDLSENKINQEMPNWLFNLSSLAFLSLSENQFKGQIPESLGHFKYLEYLDLSFNSFHGPIPTSIGNLSSLRELNLYYNRLNGTLPTSMGRLSNLMALALGYDSMTGAISEAHFTTLSKLETVQISETSFFFNVKSNWTPPFQLQFLLISSCKIGPKFPAWLQTQKSLSYLDFSRSGIEDTAPNWFWKFASYIDQIHLSNNRISGDLPQVVLNNTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGPISPFMCQKMNGTSKLEVLDISTNALSGEISDCWMHWQSLIHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLENCKVLGLINLSDNKFSGIIPRWIVERTTLMVIHLRSNKFNGIIPPQICQLSSLIVLDFADNNLSGEIPKCLNNFSAMAEGPIRGQYDIWYDALEVKYDYESYMESLVLDIKGRESEYKEILKYVRAIDLSSNNLSGSIPVEIFSLSGLQFLNLSCNHLRGMISAKIGGMEYLESLDLSRNRLSGEIPQSIANLTFLSYLNVSYNNFSGRIPSSTQLQSLDPLSFFGNAELCGAPLTKNCTKDEEPQDTNTDEESREHPEIAWFYIGMGTGFVVGFWGVCGALFFKRAWRHAYFRVLDDMKDRVYVVIALRLKWLQNNLRRYFLDLRCLRGRSEREKVMDGGGT* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0888 899 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 245 312 - -
Vvi16g0888 899 Pfam Leucine rich repeat 707 762 IPR001611 GO:0005515
Vvi16g0888 899 Gene3D Ribonuclease Inhibitor 337 798 IPR032675 -
Vvi16g0888 899 FunFam Leucine-rich repeat receptor-like kinase 32 148 - -
Vvi16g0888 899 Gene3D Ribonuclease Inhibitor 29 316 IPR032675 -
Vvi16g0888 899 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 339 437 - -
Vvi16g0888 899 SUPERFAMILY L domain-like 271 455 - -
Vvi16g0888 899 PANTHER LRR RECEPTOR-LIKE KINASE 194 288 - -
Vvi16g0888 899 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 672 795 - -
Vvi16g0888 899 SMART LRR_typ_2 677 701 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 222 246 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 96 119 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 534 558 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 606 630 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 725 753 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 294 318 IPR003591 -
Vvi16g0888 899 SMART LRR_typ_2 121 144 IPR003591 -
Vvi16g0888 899 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 438 636 - -
Vvi16g0888 899 SUPERFAMILY L domain-like 53 313 - -
Vvi16g0888 899 SUPERFAMILY L domain-like 440 777 - -
Vvi16g0888 899 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0888 Vvi-Chr16 16997575 17000451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0888 8 795 Receptor kinase-like Gene Family AT4G13920 32.262 3.15e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0888 - - vvi:100245414 1793.86