Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0887 ATGAAAGCTCCTGCAAGATCCTCTGCTATCCTCTTTTTTTTCCTCTTCCTCTTCATTGGCGCGTTTCTCTCCACGCGCCTCCTCGACTCCGCCACGTCCCTTCCTACCACGTCAGTTGAAAAGCCCATCCTACCGACCGGGACAGCTCATAAGCCCTTCAAAATCCCGAAAAAGCCCCCAGTGAAAATTGAATATCCTTTAAACTGCTCGGCCGGTAATCTCACACGGACCTGCCCGCGAAACTACCCCACAGCCTTTTCCCCAGAAGATCCTGACCGTCCATCACCGCCAGAATGTCCACACTACTTCCGTTGGATTTACGGGGATCTACGGCCATGGATGAAGAGCGGGATCACAAGGGAGATGGTGGAGAGGGCCAAAAGGACTGCTACTTTCAAATTGGTGATTTTGAATGGAAGGGCTTACGTGGAGAAATATCAGAGGGCGTTTCAGACGAGAGATGTCTTCACGCTGTGGGGGATCCTACAGTTGTTAAGGAGGTACCCTGGGAAAGTGCCTGATTTGGAGTTGATGTTTGATTGCGTTGACTGGCCAGTCATTCAATCGAATGAGTATCGTGGGCCCAACGCCACAGCTCCACCACCGTTGTTTCGGTATTGTGGGGATGACGCCACGTTGGATATCGTCTTTCCTGATTGGTCATTCTGGGGCTGGCCAGAAATCAATATAAAGCCATGGGAATCATTGTTGAAGGACCTAAAAGAAGGCAACAAGAGGAGCAGGTGGATGGAAAGGGAGCCCTATGCTTACTGGAAGGGAAATCCAGCTGTTGCTGCAACCAGGCTAGACCTCCTCAAATGTAATGTTTCAGATAAACAGGACTGGAATGCCCGAGTTTATACCCAGGATTGGATTCTAGAATCACAAGAAGGTTACAAACAATCGGATTTAGCAAGCCAATGCATTCATAGGTATAAAATTTATATTGAAGGATCTGCATGGTCTGTAAGCCAAAAGTACATTCTTGCCTGCGATTCTGTTACCTTACTAGTAAAGCCTCATTACTACGATTTCTTCACGAGGAGTTTGATGCCGGTGCACCACTATTGGCCCATAAGGGAGGATGACAAGTGCAGATCAATTAAGTTTGCTGTTGACTGGGGCAACCGCCATAAGCAGAAGGCACAGTCCATTGGGAAGGCAGCCAGTGATTTCATCCAAGAGGACTTGAAGATGGACAACGTGTATGACTACATGTTTCATCTTTTAAATGAATATGCTAAGCTGTTGAAGTTCAAGCCCACTGTGCCTGAAAAAGCTGTGGAGCTATGTTCAGAGAGAATGGGTTGTGGTGCAGAAGGATTAAAGAAGAAGTTTATGATGGAATCCATGGTGAAGTATCCCATGGATGCAAGCCCATGCACCATGCCTCCCCCCTTCAGTCCTCTAGAGCTTCAAACTTTTCTCAACAGAAAAGTAAATTCAATAAAACAAGTGGAGGCCTGGGAGAAGAAATTTTGGGAGAATCAAAATACATAG 1500 0.4693 MKAPARSSAILFFFLFLFIGAFLSTRLLDSATSLPTTSVEKPILPTGTAHKPFKIPKKPPVKIEYPLNCSAGNLTRTCPRNYPTAFSPEDPDRPSPPECPHYFRWIYGDLRPWMKSGITREMVERAKRTATFKLVILNGRAYVEKYQRAFQTRDVFTLWGILQLLRRYPGKVPDLELMFDCVDWPVIQSNEYRGPNATAPPPLFRYCGDDATLDIVFPDWSFWGWPEINIKPWESLLKDLKEGNKRSRWMEREPYAYWKGNPAVAATRLDLLKCNVSDKQDWNARVYTQDWILESQEGYKQSDLASQCIHRYKIYIEGSAWSVSQKYILACDSVTLLVKPHYYDFFTRSLMPVHHYWPIREDDKCRSIKFAVDWGNRHKQKAQSIGKAASDFIQEDLKMDNVYDYMFHLLNEYAKLLKFKPTVPEKAVELCSERMGCGAEGLKKKFMMESMVKYPMDASPCTMPPPFSPLELQTFLNRKVNSIKQVEAWEKKFWENQNT* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0887 499 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 20 495 - -
Vvi16g0887 499 SMART cap10 171 420 IPR006598 -
Vvi16g0887 499 Pfam Glycosyl transferase family 90 97 490 IPR006598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0887 Vvi-Chr16 16992805 16995367 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0887 - - vvi:100250543 1021.15