Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0886 ATGTCTATGGTGGAGGTAAGAGTTCCAAACTTGGACTGTGAGGGATGTGCTTCCAAGCTAAAGAAAGCTCTCTTCAAGCTCAAAGGAGTAGAGGAAGTTGACATAGAAATGGAGATGCAGAAAATCACAGTAAGAGGCTACTTAGTAGAGGAAAAGAAGGTGCTAAAGGCCATTAAGCGCGCCGGAAAAGCAGTGGAGCCGTGGCCATTTCCGGGATACTCGCACTTTGCCTCATTCTACAAGTACCCAAGTCACATTGTGAACCATTACTATGAGACATCCGGTAATGGAGTGAATTCAAATGTACATACATTCTTCCAAACCCCTGCCATTTACTCCGTCGCCGTGGCCTCCGATGAGGCCGTCGCTTCCCTTTTTAGCGACGAAAATGTGCATGCTTGCACCATCATGTGA 414 0.4686 MSMVEVRVPNLDCEGCASKLKKALFKLKGVEEVDIEMEMQKITVRGYLVEEKKVLKAIKRAGKAVEPWPFPGYSHFASFYKYPSHIVNHYYETSGNGVNSNVHTFFQTPAIYSVAVASDEAVASLFSDENVHACTIM* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0886 137 CDD HMA 5 66 IPR006121 GO:0046872
Vvi16g0886 137 SUPERFAMILY HMA, heavy metal-associated domain 2 69 IPR036163 GO:0046872
Vvi16g0886 137 Gene3D - 2 67 - -
Vvi16g0886 137 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 134 IPR045181 GO:0046872
Vvi16g0886 137 Pfam Heavy-metal-associated domain 6 63 IPR006121 GO:0046872
Vvi16g0886 137 ProSiteProfiles Heavy-metal-associated domain profile. 2 66 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0886 Vvi-Chr16 16983377 16985225 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0886 - - vvi:100245535 264.233