Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0884 ATGATTCTTACAATGAATTCTATTGCTCTATTTGGCCCAAGATTGTTTCGGATATTTCCCTGTTTTTGCCGTTCTTCTCGGTCATTTTCCACTAAGAACTCTGACGGCGGCGAAATGGATGATGGATTCATGAGGGTAAAGAATGGCGGCGAAATGGATGATAAATTCATGAGGATAGAGAATGGGGGCGAAATGGATGATGGATTCATGAGGATAGAGAAACCATTGAGTGAAGCTTGGGGGGTTTCTAATTTTGATCCTGTTTCAGATGAAAACCCTGATTCAGATAATGGCATTGGAAGCTCTTCCCCTGCTGAATTCTTGGCGGGGAAAGGTTATTTTGACAATATGAGGCTTGATGCTAGTAGGGTTCTTCAAATTCTTCAACAAGATTGCCCGGGATTCAGTACAAAAGCAGCTCTCGATGAGTTGCAAATAAGGGTTTCAGGTGGTCTTGTGAGAGAAGTTCTGTTAGAGATATTGAAAACAGTGAATTACACAAATAAGGAACGGTGTGCCAAATTGGGGTACAAGTTCTTCATGTGGTCTGGTCAGCAGGAAAATTATAGGCATACTGTGAATGCATACCATCTGATAATGAAGATTTTTGCAGAATCTGATGAGTTTAAAGCCATGTGGAGATTGGTTGATGAGATGATTGAGCAAGGGTTTCCAGTTACAGCGAGAACATTCCAGATTTTGATATGTACTTGTGGTGAGGCGGGATTGGCAAGGAGAGCTGTGGAGAGGTTTGTAAAGTCGAAAAATTTTAATTATAGGCCATTTAAGCATTCATATAATGCAATTCTACATTGCCTTCTTTGTTTAAAGCAGTACAAATTGGTAGAATGGGTTTATCAACAGATGTTACTTGAGGATTATTCTCCTGATATTTTAACTTATAACATAGTTATGTGTACAAAATATAGGTTGGGGAAATTGGATCAATTCCATAGATTGCTTGAAGAATTGGGTACAAATGGGTTTTCCCCAGATTTTCATACATTTAATATCCTTCTTCATCTTCTTGGAAAAGGGAACAAGCCACTTGCAGCACTTGATCTTTTGAATCATATGAAAGAAGTTGGTTTTGATCCAAGCGTTCTTCACTTCACCACATTGATAGATGGACTGAGTCGGGCTGGGAACTTGGATGCCTGCAAGTATTTTTTTGATGAGATGATTAAGCTTGGATGTATGCCTGATGTTGTTTGCTATACTGTTATGATCACAGGATATATTGTGGCTGGGGAACTTGAGATGGCTCAGGGATTGTTTGAAGAGATGACTGTGAAAGGACAATTACCAAATGTATTTACGTACAATTCTATGATCCGTGGGCTATGTATGGCAGAGAAGTTTGAGGAGGCACGCTCCATGCTTAAAGAAATGGAATCTAGAGGTTGTAATCCGAATTTTCTTGTGTACAATACCCTAGTTGGTAATCTGCGAAATGCTGGAAAGCTTAAAGAGGCTCATGAAGTAATAAGACATATGGTGGATAAGGGTCAATATGTCCATCTGCTTTCAAAATTCAAGGGATATAGGAGATGCTAA 1557 0.3931 MILTMNSIALFGPRLFRIFPCFCRSSRSFSTKNSDGGEMDDGFMRVKNGGEMDDKFMRIENGGEMDDGFMRIEKPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 334 367 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 195 227 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 404 438 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 371 403 IPR002885 -
Vvi16g0884 518 NCBIfam pentatricopeptide repeat 475 503 IPR002885 -
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vvi16g0884 518 Gene3D Tetratricopeptide repeat domain 126 290 IPR011990 GO:0005515
Vvi16g0884 518 Gene3D Tetratricopeptide repeat domain 291 358 IPR011990 GO:0005515
Vvi16g0884 518 Gene3D Tetratricopeptide repeat domain 359 431 IPR011990 GO:0005515
Vvi16g0884 518 Gene3D Tetratricopeptide repeat domain 432 514 IPR011990 GO:0005515
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Vvi16g0884 518 Pfam Pentatricopeptide repeat domain 460 502 IPR002885 -
Vvi16g0884 518 Pfam Pentatricopeptide repeat domain 265 305 IPR002885 -
Vvi16g0884 518 Pfam PPR repeat family 401 449 IPR002885 -
Vvi16g0884 518 Pfam PPR repeat family 331 379 IPR002885 -
Vvi16g0884 518 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 286 503 - -
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Vvi16g0884 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0884 265 503 Glycosyltransferase AT1G05670 32.218 5.39e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0884 - - vvi:100255723 1053.51