LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0883	ATGGAAGAATTGTATGCAGGGCAAAGTGGGCCAACTTTGGAAAGAACAACAGCCATGAAAGAGGACCCTCTTGTTCCAAAAGACGCGACAACTACTCCATTTCCAAGCCAGACTCCTGGGAAAGAGGACACTTCAAGGCAGTATGGGGACAATCTGGGAAGGCCAACGGCAATGGAGGATCACCCTTATGCCCCGGATAACACACCCCAAACCTTTTCTGTTGAGCCATATTCAACTACAAGGCTTGATGAGCATCCGAAAGAGGGAAACCCGGAGAAATCTAGAGTCAATTTAGGAGCATCAATGGGTTTAGAGGAGAATCCTCACGCGCCGAAGGATAGGCCAGAAGCAGTTGATCCTCCCAACTATCAGACCAAGGTCGCTGATCCAACTGGTGATGGTGGTGAAGAAGTGGTAATCGCTCCCATTATTAGTTCTTTTGACAAAATAAGTGTACAGGATAAGCCAGAACAACCGTTTGCTACTAGGACAGGAAGCCATGACCAGTTCTCTCCAGAGCCACTTCCCGCCGAGACCAAAACCACAGAAGATCCCCAGGATACCAACAATGCTGAGAAGCCATCCAACGAGAAAACATACACCGAAAAGATCTCAACTGCAGCAATATCTGCAAAGAACACTGTAGCTTCAAAGCTTGGATATGGAGGGACCGACAAAGGAGAGGAAACGCATGAAGGAGGCGACCAAACTGCTAAAAAAACTTCCTCCGTAACTGAATATGGTAAGAAAATTGCAAACACATTGACTGAAACGCTTTCGCCTGTGTATGGGAAGGTGGCAGAAGCAGGAAGTGCAGTGAAGTCCAAGGTGCAAGGCACTGGTTCGGAAAGAGAAGGGCCTAAAGAGCATGACAAGGGTTCTGAACCGGAGGGCTGCAGAGCACCAGATAATGTAGTCTCAATGAAGGCCTATTTGGCTGAGAAGTTGAAGCCCAGCGATGAAGACAGGGCCCTTTCTGAGGTTATTTCGGATGCGTTGCAGAAGAGGAAGCAAGAGCCTGAGCTTGAGACTAAGTCTAAGCCAATGGGGAAGGTGACAGAGTCGGAGGAGGTGGCGAGGAGGCTGGGCACCGAAAATAAGCCTTCAGGGGAAGCCTCTGATTCTGGAGACGTGAAATTTGATTCTTCGAGCAATGTGAACTCTGGGTCTGGTGTGGTGGATAAGCTTAGAGGGGCAGTTAGTTCATGGCTTGGGAAAGGAGGAGACTCACAGACACGCCCACAGCCCATTGGTAATGGATTATGCCACTATTTACTCCTTTTTTTTTTTAATTATTTTTTTGGGAGTTTTTCAGCTTGCAGATGTGACTTTTTTTCCCTTCTTTCTTTGGGAGTTTTAGCAGGCAATGAAGGTTTTTCCACTTCTGGCAATGGGGGAGAAAGGCAAGGAAATGACGTTGCGAAGGATAAAAGAACTTAG	1440	0.475	MEELYAGQSGPTLERTTAMKEDPLVPKDATTTPFPSQTPGKEDTSRQYGDNLGRPTAMEDHPYAPDNTPQTFSVEPYSTTRLDEHPKEGNPEKSRVNLGASMGLEENPHAPKDRPEAVDPPNYQTKVADPTGDGGEEVVIAPIISSFDKISVQDKPEQPFATRTGSHDQFSPEPLPAETKTTEDPQDTNNAEKPSNEKTYTEKISTAAISAKNTVASKLGYGGTDKGEETHEGGDQTAKKTSSVTEYGKKIANTLTETLSPVYGKVAEAGSAVKSKVQGTGSEREGPKEHDKGSEPEGCRAPDNVVSMKAYLAEKLKPSDEDRALSEVISDALQKRKQEPELETKSKPMGKVTESEEVARRLGTENKPSGEASDSGDVKFDSSSNVNSGSGVVDKLRGAVSSWLGKGGDSQTRPQPIGNGLCHYLLLFFFNYFFGSFSACRCDFFSLLSLGVLAGNEGFSTSGNGGERQGNDVAKDKRT*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	269	303	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	281	298	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	148	244	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	368	391	-	-
	Vvi16g0883	479	PANTHER	LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED	59	411	IPR037491	GO:0009737
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	1	135	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	185	199	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	30	51	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	315	364	-	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	315	391	-	-
	Vvi16g0883	479	Pfam	CAP160 repeat	208	223	IPR012418	-
	Vvi16g0883	479	MobiDBLite	consensus disorder prediction	460	479	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0883	Vvi-Chr16	16962310	16963844	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0883	-		-	vvi:100260796	870.537