Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0881 ATGTTTAAGTCAGCGAGATGGAGAAGCGAAAAGATCAAGATCAAAGCTGTATTCAAATTGCAGTTTCAGGCTACACAGGTGCCAGAGTCACGAGGAAATCTCTTGATGATATCTTTGATTCCAGAGGATGTTGGGAAGCCAACTGTGAGGTTGGAGAAAGCTGCAGTCAGGGAAGGAACCTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTGGATCATCCAAAACAGGTATTCTGGGAGAAGCTTCAATTAACTTTGCAGACTATGAAGAGGCTACTGAACCGCTGACTGTGTCTCTGCCCCTTCAGACTCTTAACTCTGGTGCAATTTTACATGTCACAATCCAGAATATGCAAGGAGTTGCTAATCAAAGAGGTGTTGAAGAAAAAGGAAGTCAAGCAACTAAATCCCGACATAGGAGATCCCAGAGCCAAATTGTCAACTGCAAAACAGACAGAAACGAATATAATTTAACTGAAGATGAGGACCTTGATAGAATCACGTCTCAGAATGGTGAAAACAAAAACTTCAGAGTAAATTGTGGCTCTTATGCTACATTAACTCCAACAGCACAAGATCTTGGATTGAAGAATGCTACTACTCATCGGAATCCAAACAGCCTTCTATCACCACTCAGACAGAGCTCCAGGCCTCAAGAGGGAACAATTGCTGCCACCACAAGAAAAGATCGTATGCATTGGAGATCAAATACAGATTTTTCTGTTGGTTCTGCTTCAGATGGCAGCATGATCGACTCGACAAACAGTGCAGAAGACAACTTTCCAGGAGGTTTCAAAGAGGATTCGGACAGTACTACTGAAAAACTCAAAAGTGAAAATTTTAACTTGTTGAGGCAAGCAGAATTATCAGAACTGGAATTGCAGTCTCTTCGGAAACAGATTGCGAAGGAGTGTAAAAGGGGACAAGATCTAACAAGAAAAAATGTTGGTCTAAAAGAGGAGAGAGATGCACTTAAAGAAGAATGTGAACAACTCAAATCCATGAAGAAATGTATCAATGATGAAGAACTCTCAGACAGGTTAACATTTGAGAGGGAAGCTTCAAGGGTCCTTCTGGAAGAAATGAGGAAAGAGCTGGACTATGAAAAGGATTTAAATAGGAATCTTCGGTTACAACTGCAGAAGACACAAGACTCAAACTCTGAGTTGATTATTGCTGTGAGAGACCTTGAGGAAATGTTGGAACCAAGGAATAAGGAAATATTTCAGCTTTTCGGTGATATAGAAAACAGAGAGAAAAGTGATGATGTTGAGGCAAAAATTTCCAAACTGAAAATGAACAAGAATGAAGACCAAGAGGCACTGGAGGAGCTGGTTGAGGAGCAAATCGATGCCAAGGAAGTTGGCGTCTTACAGAAAAAGATGACAGACCTGCACGGTGAAATAGAGGTGCACAGGAAAGATAGGGAAGAGCTAGAGATGCATATGGCACAGCTTGCATTGGACAATGAAGTTCTAAAACAGGAAAAGCAAAATATCTCAACTTTGGAGCAATACCAGAAGCAAGAACTAATGAAGATACAAAATGAACTCTCAGCTTCATTGGCTACCATTAAAGAACTTGAATCCCAGGTGGAGAGACTAGAGAAAGAAATCAAGAAGCAGGCACAAAAACTCTCAGAATCTTCCAATGCTGTTAATGAACTTCAGATGCAGGTTAAGAGCTTGGAGAAAGAATTGGAGAAGCAGGCACAGGGTTTTGAAGATGATTTGGAAGCCATGACACGTGCCAAAATTGAACAGGAACAGAGGGCTATCCGAGCAGAGGAGACCTTGAGAAAGACAAGGTGGAATAATGCTCAATCAGCTGAGAGGCTTCAAGAGGAATTTAGAAGGATTTCTGTGGAAATGACATCTAAGTTTGATGAGAATGAGAAGGTGGCCATGAAAGCAGTGACAGAAGCTAATGATTTGCGTGTGCAGAAAAGAATTCTGGAAGAGATGCTCCAGAAAGCCAATGAGGAGATTGGATTAATTAAAGATCAGTATGATGTAAAACTGCAAGAGCTGTCAAACGAAGTAGATTTGAAAACAAAACAAATAGAGAAGATGACATTGGATCTTGACAAGAAGCCCAAGCAACTTGAATATGCAGAAAAACAGGAGGGAGAAAAACATGAGGCTTCCTTTGCAGAGATCCAAATGCTCAGAGCTGAGATAGAAAGGATCACAAGTGAGAAGAAAACCCTCTCAGAACAGGTGGAAGAGAAAGAAAAGTTTAGAGATGAGATGGAACAAATGAAGACAGCAATTGGTGAAACAGAAAGACTGATAAAAAGACAGAATGAAGAAAAAGCAGAATTGGAAAGAAAATTTGCTTCGGTGATGAAGGAAGCAGAGAAAGTACAGGAGGATTTACATACAATGACTTGTATGAAGGATGACAATGAGACATTGATTGGGAGCTTGCAATCAGAACTAGACAACCTTAAACCTCAGTACAGTGAGTTGAAAAACCTCTTGTTTCAAGAAGTGCTAGAGAAGGAAAACCTCATGCAACAAGTATTTCAATTGAAGGGTGACCTAGAGAAGAAAGAAGAGGTTGTTGCTGTTACAGAGAATACAGGCAAGGATAACAATGGACAAGCTACATTATCAGATGGAACACAAGCGACTGCCACCACAATGGAACAACTCAATCATAGGACAACAATTTGTGAAGAACAATTTCAAAAGGAGGCCAGAGAAGCTGGGAATGTTACAGCGCTTGCTAGTCAGCATGAAGAAGGAGAAAATACAGGGGGAGATTTGTTAAATCCCGGGATGAAATCAATGGTATGCCTGTCAGTCCAAAATGAAATGGGCACAACATCAGTTCAAAGAAATGTAGAAACTTACTCAGAGAAAGAGATGACCGTCTCCATTTTCCATACCAATGATGAGAGCAATCTCACTGAATTGTTAGCTGAAGTGGCATTGCTTAAGGAAAGGAACAAATCCATGGAAGGGGAGCTTAAAGAAATGCGAGAGAGATATTCAGAGATAAGTCTCAAATTTGCAGAAGTTGAAGGTGAAAGGCAACAGCTTGTGATGACTGTACGGAACCTCAAGAATGGTAAGAAAAGCTAA 3156 0.4046 MFKSARWRSEKIKIKAVFKLQFQATQVPESRGNLLMISLIPEDVGKPTVRLEKAAVREGTCTWENPIYETVKLIKEKKTGIIHEKIYRFIVSTGSSKTGILGEASINFADYEEATEPLTVSLPLQTLNSGAILHVTIQNMQGVANQRGVEEKGSQATKSRHRRSQSQIVNCKTDRNEYNLTEDEDLDRITSQNGENKNFRVNCGSYATLTPTAQDLGLKNATTHRNPNSLLSPLRQSSRPQEGTIAATTRKDRMHWRSNTDFSVGSASDGSMIDSTNSAEDNFPGGFKEDSDSTTEKLKSENFNLLRQAELSELELQSLRKQIAKECKRGQDLTRKNVGLKEERDALKEECEQLKSMKKCINDEELSDRLTFEREASRVLLEEMRKELDYEKDLNRNLRLQLQKTQDSNSELIIAVRDLEEMLEPRNKEIFQLFGDIENREKSDDVEAKISKLKMNKNEDQEALEELVEEQIDAKEVGVLQKKMTDLHGEIEVHRKDREELEMHMAQLALDNEVLKQEKQNISTLEQYQKQELMKIQNELSASLATIKELESQVERLEKEIKKQAQKLSESSNAVNELQMQVKSLEKELEKQAQGFEDDLEAMTRAKIEQEQRAIRAEETLRKTRWNNAQSAERLQEEFRRISVEMTSKFDENEKVAMKAVTEANDLRVQKRILEEMLQKANEEIGLIKDQYDVKLQELSNEVDLKTKQIEKMTLDLDKKPKQLEYAEKQEGEKHEASFAEIQMLRAEIERITSEKKTLSEQVEEKEKFRDEMEQMKTAIGETERLIKRQNEEKAELERKFASVMKEAEKVQEDLHTMTCMKDDNETLIGSLQSELDNLKPQYSELKNLLFQEVLEKENLMQQVFQLKGDLEKKEEVVAVTENTGKDNNGQATLSDGTQATATTMEQLNHRTTICEEQFQKEAREAGNVTALASQHEEGENTGGDLLNPGMKSMVCLSVQNEMGTTSVQRNVETYSEKEMTVSIFHTNDESNLTELLAEVALLKERNKSMEGELKEMRERYSEISLKFAEVEGERQQLVMTVRNLKNGKKS* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0881 1051 Coils Coil 381 422 - -
Vvi16g0881 1051 Coils Coil 857 877 - -
Vvi16g0881 1051 Coils Coil 664 716 - -
Vvi16g0881 1051 Coils Coil 533 620 - -
Vvi16g0881 1051 Coils Coil 450 470 - -
Vvi16g0881 1051 Coils Coil 330 364 - -
Vvi16g0881 1051 Coils Coil 993 1034 - -
Vvi16g0881 1051 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 12 138 IPR019448 -
Vvi16g0881 1051 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Vvi16g0881 1051 MobiDBLite consensus disorder prediction 145 167 - -
Vvi16g0881 1051 MobiDBLite consensus disorder prediction 259 282 - -
Vvi16g0881 1051 MobiDBLite consensus disorder prediction 219 294 - -
Vvi16g0881 1051 Coils Coil 742 814 - -
Vvi16g0881 1051 MobiDBLite consensus disorder prediction 219 245 - -
Vvi16g0881 1051 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 572 - -
Vvi16g0881 1051 Coils Coil 491 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0881 Vvi-Chr16 16945006 16949330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0881 - - vvi:100248827 1989.54