Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0877 ATGGTTAAGCTAACAATAGTTGGAAGGGTAAGCGATGGGCTTCCTCTAGCTCAAGGTCTTAGGTACCAAAATGATGAGGAGAATGAGAATTTCTTATGTTACAAGCAACAAGCAGAGTTCATCCTCAAAGAAATCTCAAGAGGAGCCTTGTCACCTTCAAAGATGACTATCCACATTGATCATTACCATTGTTTCAACTACTTGGTTGAGAATGGACATTGCTTCATCACATTATGCGATTCTTCATATCCAAGAAAACTAGCTTTCCACTATCTGCAAGATTTGCAAAAGGAGTTTGAGAAGTTTGATATTGGCCTCATGGAGAAAATTACAAAACCATACAGCTTTGTTAGATTTGATGGCATTATTGGGAATATTAGAAAGCAATATATAGATACAAGAACGCAGGCCAATCTGTCAAAGCTAAATGCTAATCGTGGACAAGATCTTGATATCATTGCAAAACACATGTCTGAAATCATACAAAAAGGACCAAAATCAGGTGAGTTCCATCTCCAATACTGGGTATGCTTCTGTTGA 540 0.3759 MVKLTIVGRVSDGLPLAQGLRYQNDEENENFLCYKQQAEFILKEISRGALSPSKMTIHIDHYHCFNYLVENGHCFITLCDSSYPRKLAFHYLQDLQKEFEKFDIGLMEKITKPYSFVRFDGIIGNIRKQYIDTRTQANLSKLNANRGQDLDIIAKHMSEIIQKGPKSGEFHLQYWVCFC* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0877 179 Gene3D Longin domain 1 131 - -
Vvi16g0877 179 SMART Longin_2 37 122 IPR010908 -
Vvi16g0877 179 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 168 IPR044565 GO:0005484|GO:0006888|GO:0006890
Vvi16g0877 179 Pfam Regulated-SNARE-like domain 38 120 IPR010908 -
Vvi16g0877 179 SUPERFAMILY SNARE-like 1 130 IPR011012 -
Vvi16g0877 179 CDD Longin 5 130 IPR010908 -
Vvi16g0877 179 ProSiteProfiles Longin domain profile. 6 123 IPR010908 -
Vvi16g0877 179 FunFam 25.3 kDa vesicle transport protein-like 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0877 Vvi-Chr16 16909806 16910663 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0877 K08517 - vvi:100264227 343.199