Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0875 ATGGAGTATCCCAGTCTTGTTTTCTCTCAACTTGGAGGCGTTTTCAATACAGATATCATGATTTGGAATGGTATGATAAGAGGATATGCTTACAATGGTCCCGTCGATAGATGCATCTCAATGTTCGACGAAATGCTTCAAAGAGGACTTAAACCCAATAACTTCACATACCCATATGTGTTGAGCTCATGTTCTGAGATGGGTTGTTTTGGTAGAGGCAGGAAAGTGCATGCCCAGATCATGAAGTCCGGATTTGAGTCGAATTTCATTGTTGCTGATTCATTGTTGAATATGTATATAAAGATGTCAGACTCTTTTGAATTGGGAGGTGTCAGAAATGGGAAATTGAATGATGCTCGTATGATATTCAATGGAATTTGTGTCAAACCAGTTGAATTGTGGAATAGGATGATCTCTAAATATGTTAGTAATGGTGATGTAGAGTCTGCAAGGCAGCTGTTTGACAATATGCCTGAAAGAGATGTCATTTCTTGGAATTCAATGATTTCGGGTTATGCCAGAATTGGGGATGTGGCTAATGCAAGATATTTATTTGAGCAGATGCCGGAGAAGAATGTGGTGACTTGGACTTCGATGATTGGGGCATATAGTGGTTCAGGAGACCTTGAGACTGCAGCATGTCTTTTTGAGAAAATGCCATGCAGGAATGCGGTTTCTTGGAATGCTATGATTTCAAGCTACACCCAGAATGGAAAGTATGAAAAATCGTTGGATCTCTTTGTGAAAATGCAGTTGGAAGGTGTGGATTCAGATGGGTTCACCTTTGTTTCTGTTTTGTCAGCTTGTTCCAACTTAGGTGCTCTGGAGTTTGGGAAGTGGGTACACTCTCTGATAAAAGATTGGTCTCAGTTGGGAGTTATAGTAGGGACTGCCCTCATGGAAATGTATGCTAAATGTGGAGATGTAAATAGAGCTTTTGCGGTCTTTGTCAAACTTGGGAACAAGGATGTTTTTTGCTGGAATGTTATGATCAAATCACTAGCCATCCATGGAAGAACAGAAGATGCAGTAAAACTTTTCTTCTTGATGCAAAAGATAGGATTGAAGCCTAATGGCTACACATTCAGTAGTGCATTATTTGCTTGCAGTCATGGAGGTTTGGTAGAAGTCGGTCGTGAAATCTTTTATGGTATGGAAAGAGATTTTGGGGTTTGTCCAAAGCTTGAGCACTTTGGATGTTTGATTGACTTGCTTAGCAGAAATGGCCGGCTTGAGGAAGCTGAGGCTCTAGTGAGGGAGATGCCCTTTGAGCCAGATATTGCTATTTGGGGAGCTCTGCTTGGAGGTTGTAGAGTGAAGAGTGACTTGAAGTTGGCAGAGGAAGTGGTGGAGAGGGCTGGTGGATTAGAAGCAAATGAATCAGGAGTTTATGTGCTTTTGTCTAATATTTATGCATCTGCAGGTCAATGGCCGGAGGCTTTAAGTGCAAGAGAGAAGATGGAAGAGAAGAAAGTGTGGAAGAAAGCAGGGTGCAGTAGTGTTATTCATGATATTCATATGGATGTCTGA 1530 0.4137 MEYPSLVFSQLGGVFNTDIMIWNGMIRGYAYNGPVDRCISMFDEMLQRGLKPNNFTYPYVLSSCSEMGCFGRGRKVHAQIMKSGFESNFIVADSLLNMYIKMSDSFELGGVRNGKLNDARMIFNGICVKPVELWNRMISKYVSNGDVESARQLFDNMPERDVISWNSMISGYARIGDVANARYLFEQMPEKNVVTWTSMIGAYSGSGDLETAACLFEKMPCRNAVSWNAMISSYTQNGKYEKSLDLFVKMQLEGVDSDGFTFVSVLSACSNLGALEFGKWVHSLIKDWSQLGVIVGTALMEMYAKCGDVNRAFAVFVKLGNKDVFCWNVMIKSLAIHGRTEDAVKLFFLMQKIGLKPNGYTFSSALFACSHGGLVEVGREIFYGMERDFGVCPKLEHFGCLIDLLSRNGRLEEAEALVREMPFEPDIAIWGALLGGCRVKSDLKLAEEVVERAGGLEANESGVYVLLSNIYASAGQWPEALSAREKMEEKKVWKKAGCSSVIHDIHMDV* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0875 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 160 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat 390 421 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat family 223 270 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat family 322 369 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat family 18 64 IPR002885 -
Vvi16g0875 509 FunFam Os11g0433100 protein 103 190 - -
Vvi16g0875 509 Gene3D Tetratricopeptide repeat domain 293 506 IPR011990 GO:0005515
Vvi16g0875 509 Gene3D Tetratricopeptide repeat domain 8 110 IPR011990 GO:0005515
Vvi16g0875 509 Gene3D Tetratricopeptide repeat domain 192 292 IPR011990 GO:0005515
Vvi16g0875 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 141 502 IPR046960 GO:0003723|GO:0009451
Vvi16g0875 509 Pfam E motif 441 501 IPR046848 -
Vvi16g0875 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat 297 319 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat 134 161 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat 194 222 IPR002885 -
Vvi16g0875 509 Pfam PPR repeat 163 193 IPR002885 -
Vvi16g0875 509 FunFam Pentatricopeptide repeat-containing protein 191 287 - -
Vvi16g0875 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vvi16g0875 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 18 52 IPR002885 -
Vvi16g0875 509 Coils Coil 509 509 - -
Vvi16g0875 509 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 294 509 - -
Vvi16g0875 509 Gene3D Tetratricopeptide repeat domain 111 191 IPR011990 GO:0005515
Vvi16g0875 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vvi16g0875 509 SUPERFAMILY TPR-like 112 247 IPR011990 GO:0005515
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 163 193 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 21 53 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 325 358 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 133 162 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 398 422 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 194 221 IPR002885 -
Vvi16g0875 509 NCBIfam pentatricopeptide repeat 225 255 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0875 Vvi-Chr16 16896149 16897678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0875 18 499 Glycoside Hydrolase AT3G49170 31.237 4.59e-76 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0875 - - vvi:100247084 1038.48