Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0874 ATGTTGACGTCGCCGGTGGTGAACACGTACCCTCTGTCGAGCTACACCTTCGGAACGAAGGAGCCCAAGATGGAGAAGGACACTTCCGTTGCCGATCGCCTCGCTCGCATGAGAGTCAATTATATGAAAGAGGGGATGAGGACAACTGTCGATGCAATTTTACTGGTGCAGGAACATACTCATCCCCACATCCTTCTTCTCCAAATTGGAAACACATTCTGTAAACTTCCTGGTGGACGCCTCAAGCCAGGAGAGAATGAAATTGAGGGTTTGAAAAGAAAGCTGTCTAGCAAACTTGCTGCTAATTCACCTGGTCTTCAACCAGATTGGCAGATAGGTGAATGTGTGGCTATCTGGTGGAGGCCAAATTTTGAAACTGTAATGTACCCATACTGCCCTCCCCACATAACAAAACCAAAGGAGTGCAAGAAGCTTTTTATTGTTCATTTATCTGAAAGAGAGTACTTTGCCGTGCCTAAAAATTTGAAACTTCTTGCTGTTCCATTGTTTGAACTCTATGATAATGTTCAGAGATATGGACCAGTTATATCCACTATTCCACTGCACCTGTCTAGGTTCCAGTTCAACATGATCGCTGCATGA 603 0.4478 MLTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMRVNYMKEGMRTTVDAILLVQEHTHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSPGLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPLHLSRFQFNMIAA* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0874 200 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 6 197 - -
Vvi16g0874 200 PIRSF CPSF-25 2 200 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vvi16g0874 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 3 198 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vvi16g0874 200 FunFam Pre-mRNA cleavage factor Im subunit 2 5 197 - -
Vvi16g0874 200 Pfam Nucleotide hydrolase 6 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0874 Vvi-Chr16 16882428 16894806 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0874 K14397 - vvi:100266110 415.616