Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0873 ATGAAAAACTTCTCAACGCAATTCAATCCTCAAAGCCCAGAAGTAGAAAACCCAAACATACAAGAAGAAAAGGCAGAACAACACATAGAAGAAGAAAGAGCTAGGTGCGACTGGGAATTCAATCTCTCCACTGTTGTTACCTCGAGCTCCACCGGAGCCAGCACTGACACCATCGGCGTCATAGAGTTCGACCCCTCTGATAACCTCGTGGCCACTGGAGGAATCGCTCGGAAAATTAGAGTTTATAGTGTAAAATCCTTGTTGCCCGGCGAAAATCATAGCCATGGTGAGCACAACGTTAAATTGTTACAACACAATAATGCATGTGACTACTATATATGGACCCCGGCTAAGCTCAGTAGCCTAAGGTGGAAACCGGGCTCCTCCGGCCGAGTACTCGGCTCCGGCGACTACGATGGGGTGGTCACCGAGTACGACCTCGACCGGAAAATCCCCATTTTCGAGCGAGACGAGCACGGTGGACGTCGAATATGGAGCGTGGACTACTCACATTGGAATCCGTTTGTGGGTGCGTCGGGGTCTGACGATGGCACCATACAAATGTGGGATCCACGTTGCGAAGGAACAACGAATGTAGCGAAAGTACGACCCAGTGCGGGCGGGGGCGCCGTGTGTTGTGTGGAGTTCAACCCCTTCGGCGGTCCATTGGTCGCCGTCGGGTGTGCGGACCGAAGAGCCTACGGCTATGACGTGAGGAAGATGGTCGACCCGGTACTAATATTCGACGGACACCAAAAACCGGTGACCTACGTGCGGTTCCTGGATGAGCATATGATGGTAACGTCAGGGACGGATGGGTGCTTGAGGCTTTGGAGTATGCATGATGCCCGAATGATTCGGGTGTACATGGGGCATATGAATACTCGGAACTTTGTTGGGTTGTCAGTATGGAGGACAGGCGGGTTACTGGGATGCGGGTCGGAAAATAACCATGTATTCGTGTATGACAAGAGGTGGAGTGAGCCCATATGGGTGCATGAATTCGGGGGAGGGAGTAGAGATGGGTGTGACCCGAAATTTGTGAGCAGCGTGTGTTGGAGGCAAGTGGGTAAGGATGTGTGCACCCTTGTGGCTGGTGGGTCGGATGGGAGTCTGCAGGCAAAAGATTCCACCACCGCCGTCACTTCTTATGAATGGGAAATGAAAAACTTCTCAACGCGATTCAATCCTCAAGGCTCAGAAGTGGAGAACCCAAACATACAAGAAGAAAAGAGAGAGCAACACATCGAAGAAGAAAGAGCTAGACGCGACTGGGAATTCAGTCTCTCCACTGTTGTTTCTTCGAGCTCTGACGGAGCCAGCACCGACACCATCGGCATCATAGAGTTCGACCCCTCTGATAACCTCGTGGTCACCGGAGGAATCGCTAGGAAAATTAGGGTTTATAGTATAAAATCCTTCTTGTCCGACGAAAATCATAGCCATGGTGAGCGCAAAGTTACATGGTTACAACATAATGATGCATGTGACTACTATGTATGTACCCCAGCCAAGCTCAGTAGCCTAAGGTGGAAACCTGGCTCCGCCGGCCGAGTACTAGGCTCTGGTGACTACGATGGGGTGGTCACCGAGTACGATCTCGACCAAAAAATCCCCATTTTCGAACGTGACGAGCACGGTGGACGCAGAATCTGGAGCGTGGACTACTCACATTGGGATCCGTTTGTTGGCGCGTCGGGCTCTGACGACGGCACCATGCAAATGTGGGATCCACGTTGCGAGGGTATAAAGAATGTGGCCAAAGTACGACCCAGCGGGGGTGGTAGCGCGGTGTGTTGTGTGGAGTTCAACCCCTTCGGTGGTCCATTGATCGCTGTCGGGTGTGCGGACCGAAGAGCCTATGGCTATGACGTGAGGAAGATGGTCGACCCGGTACTAATATTTGACGGGCACCAAAAGACCGTGACCTACGTGCGGTTTCTGGATCAGCATACGATGGTGACATCAGGGACGGATGGCTGCTTAAGGCTTTGGAGTATGCATGACGCCCGAATGATTCGGGTGTACATGGGGCATATGAACACTCGGAGCTTTGTGGGGTTGTCAGTGTGGAGAACAGGCGGGTTACTGGGATGCGGGTCGGAAAATAACCATGTATTTGTGTACGACAAGAGGTGGGGTGAGCCCATATGGGTGCATGAATTTGGGGTCGGGAGTCGAGATGGGCGTGACCCGAATTTTGTGAGCAGTGTGTGTTGGAGGCAAGTGGGCGGTGAGGATGGGTGCACCCTTGTGGCTGGTGGGTCGGATGGGATTTTGGAGGTGATTGTGGGGAAGAAAAAAGCATTTTGA 2313 0.5227 MKNFSTQFNPQSPEVENPNIQEEKAEQHIEEERARCDWEFNLSTVVTSSSTGASTDTIGVIEFDPSDNLVATGGIARKIRVYSVKSLLPGENHSHGEHNVKLLQHNNACDYYIWTPAKLSSLRWKPGSSGRVLGSGDYDGVVTEYDLDRKIPIFERDEHGGRRIWSVDYSHWNPFVGASGSDDGTIQMWDPRCEGTTNVAKVRPSAGGGAVCCVEFNPFGGPLVAVGCADRRAYGYDVRKMVDPVLIFDGHQKPVTYVRFLDEHMMVTSGTDGCLRLWSMHDARMIRVYMGHMNTRNFVGLSVWRTGGLLGCGSENNHVFVYDKRWSEPIWVHEFGGGSRDGCDPKFVSSVCWRQVGKDVCTLVAGGSDGSLQAKDSTTAVTSYEWEMKNFSTRFNPQGSEVENPNIQEEKREQHIEEERARRDWEFSLSTVVSSSSDGASTDTIGIIEFDPSDNLVVTGGIARKIRVYSIKSFLSDENHSHGERKVTWLQHNDACDYYVCTPAKLSSLRWKPGSAGRVLGSGDYDGVVTEYDLDQKIPIFERDEHGGRRIWSVDYSHWDPFVGASGSDDGTMQMWDPRCEGIKNVAKVRPSGGGSAVCCVEFNPFGGPLIAVGCADRRAYGYDVRKMVDPVLIFDGHQKTVTYVRFLDQHTMVTSGTDGCLRLWSMHDARMIRVYMGHMNTRSFVGLSVWRTGGLLGCGSENNHVFVYDKRWGEPIWVHEFGVGSRDGRDPNFVSSVCWRQVGGEDGCTLVAGGSDGILEVIVGKKKAF* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0873 770 FunFam Uncharacterized protein 417 764 - -
Vvi16g0873 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 288 IPR001680 GO:0005515
Vvi16g0873 770 Pfam WD domain, G-beta repeat 244 279 IPR001680 GO:0005515
Vvi16g0873 770 Pfam WD domain, G-beta repeat 158 190 IPR001680 GO:0005515
Vvi16g0873 770 Pfam WD domain, G-beta repeat 631 666 IPR001680 GO:0005515
Vvi16g0873 770 Pfam WD domain, G-beta repeat 545 577 IPR001680 GO:0005515
Vvi16g0873 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 635 667 - -
Vvi16g0873 770 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 372 769 IPR044616 -
Vvi16g0873 770 MobiDBLite consensus disorder prediction 1 26 - -
Vvi16g0873 770 SUPERFAMILY WD40 repeat-like 441 760 IPR036322 GO:0005515
Vvi16g0873 770 SUPERFAMILY WD40 repeat-like 27 372 IPR036322 GO:0005515
Vvi16g0873 770 SMART WD40_4 669 710 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 536 577 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 429 470 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 241 279 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 483 533 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 196 237 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 149 190 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 628 666 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 282 323 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 106 146 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 582 624 IPR001680 GO:0005515
Vvi16g0873 770 SMART WD40_4 43 83 IPR001680 GO:0005515
Vvi16g0873 770 FunFam Uncharacterized protein 30 376 - -
Vvi16g0873 770 Gene3D - 34 376 IPR015943 GO:0005515
Vvi16g0873 770 Gene3D - 417 764 IPR015943 GO:0005515
Vvi16g0873 770 MobiDBLite consensus disorder prediction 1 18 - -
Vvi16g0873 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 635 675 IPR001680 GO:0005515
Vvi16g0873 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0873 Vvi-Chr16 16867341 16874495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0873 516 679 Miscellaneous Gene Families AT5G08390 26.506 4.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0873 K10143 - vvi:100257557 790.801