Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0871 ATGGGAAAGCAGAAACAGCAGGTGATCTCCCGTTTCTTCGCTCCCAAACCTAAAGCCCCTTCATCATCTTCATCTTCAATACCATCATCACCATCACCATCTCCATCTCCATCTTCGCTCCCAAACCCACCAACCCCTCCACCGAAAATCTCCACCACTGTCACTTTCTCTCCTTCCAAACGCCTTCCTTCCTCCCACGTGTCCCCCTCCACCAAACCCCCCAAAGCCCCCAAAATCTCTCACCCCATTGACCCCTCTCTCCACCAAAAGTTCGTACAGAAGCTTCTTGAGCCTTCTTCCTCAACACCCACAAAGCTCCCACTTCCAACCACCAAGTACACTCCACTGGAGCAACAAGTCGTGGACCTAAAGCAAAAATACCCAGATGTTCTATTGATGGTAGAAGTTGGGTATAGGTATAGATTCTTTGGTGAGGATGCTGAGATTGCAGCTAGGGTGTTGGGCATTTATGCTCATGTTGATCACAATTTCTTGACTGCTAGCATACCAACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTCAGTGCAGGGTTTAAGGTAGGTGTTGTTAAGCAGACCGAAACTGCAGCCATTAAGGCGCATGGTTCGAATAAACTGGGACCCTTTTGCCGGGGTTTATCGGCATTGTACACGAAGGCGACGTTGGAGGCAGCAGAGGAGGTGGGAGGTGGGGAAGAGGAATGTGGGTCTTATAATAATTACTTGGTTTGTGTAGTTGAGAAAGGGATTAGTGTAGAAAATAGTAAAGATTGTGGTGTTGGGGGTGGGTTTGATGTGAGAATTGGGATTGTTGCAGTTGAAGTATCAACGGGGGATGTTGTTCATGGGGAGTTCAATGATAATTTTATGAGGGCTGGGCTTGAGGCTGTGATTTTGAGCATGTCTCCTGCTGAATTGCTTCTTGGATACCCGCTCTCTAAACAAACAGAGAAGTTGCTATTAGCCTATGCTGGACCTGCATCAAATGTTCGTGTGGAGCGTACCTCAAGAGATTGCTTCAGTGATGGTGGAGCACTTGCTGAAGTTATGTCTTTATATGAGAACTTAAGTGAAAATAGTAGAGCTGATCATCAAGTGGACAACACAGAAGTGATGGAACAGGAAAATCATTGCCTGGCAATTGAGGGAATTATGAGCATGCCAGATTTGGCTGTTCAAGCACTGGCCTTAACCATTCGCCATTTGAAACAATTTGGTTTGGAAAGAATTCTGTGTATGGGAGCTTCGTTTCGGCCCTTTTCAAGCAACATGGAGATGACCCTTTCGGCGAATGCACTTCAACAATTAGAGGTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGGGTATCTCACCCTTTATGTGATAGCAACATGATATCTGCTCGTCTTGATGCTGTTTCTGAGATTGTGATGTCCATGGGTTCTTGCAAAGCATCGCAAAATTTTGGTGGGATTGATGAGGGAGACTCTGATGTCACATATGTACAACCTGAGGTTAATTATTTGCTTTCTTCAGTTTTAACAACTTTAGGAAGGTCACCAGATATTCAACGTGGACTAACAAGAATTTTCCACCGGACAGCCACTGCATCTGAGTTCATTTCAGTCACGCAAGCTATTTTATTTGCTGGGAAACAACTTCAGCGACTTCACATTGAAGAGAAAGATGTTGATGAGAAGGGACAATCAAGGAGTGTGCGCTCTGTTTTGTTAAGAAAGTTGATTTTGACAGCTTCATCATCTGGTATAATTGGGAATGCTGCAAAACTATTGTCCACCCTAAACAAAGAAGCAGCTGATAAAGGGGATTTACCTAACTTATTCATTATTTCAAGTGGCCAATTCCCAGAGGTTGCTAAAGCAAGGTCACTGGTTCAATCAGCAAAGGAGAAATTGGATTTATTAATTGGATTGTATCGGAAGCAGCTTCGAATGAACAATTTGGAATTCATGAGTGTTTCTGGGACCACACATTTGATAGAGTTACCTGTAGATGTAAAGGTACCTTCAAATTGGGTGAAGGTAAATAGTACAAAAAAGACTGTTCGGTATCACCCCCCTGAGGTATTGAGTGCCCTAGATCAACTATCTCTGGCAAATGAGGAGCTCATGATTGCATGTAGAGGTGCTTGGGACAGTTTTCTAAGGGCATTTGATAAATATTTCTCTGAGTTCCAAGCTGCTGTCCAAGCTCTGGCTACTTTGGATTGTCTGCATTCACTTGCCATTCTGTCAAGAAATAAGAATTATGTACGTCCAGTTTTTGTTGGTGATAGTGAACCTGTTCAGATGCATATTTGTTCTGGTCGTCATCCGGTTTTGGAGACAGTATTACAAGACAATTTTGTCCCAAATGACACAAATTTGCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGTGTGTGTTAGATGGCATCCACACCCGAATGGGCTCCTCTGACAGTATCCAGCAAGGAAGGAGCACCTTTCTAGAAGAACTGAGCGAGGCATCTCACATAATCCACAATTGCACATCACGCTCATTGGTTATCATCGATGAACTGGGGAGAGGCACAAGTACACATGATGGTGTAGCAATTGCCTACGCTACATTGCATTATCTTCTGGAGCATAAGAGATGCATGGTCCTCTTTGTCACCCACTACCCTAAAATTGTTGATGTCAAGAATGAATTCCCAGGCTCTGTGGGGGCATACCATGTTTCATATATGATGTCACAGAGAGCTATGGATATGGATACGGATACGGATAAAACAGACTCAAAATCTGATAAAAATGCTCAAACTATGGATCATGAGGATGTCACCTACCTTTATAAGCTTGTGCCTGGCGTTTCAGAGAGAAGTTTTGGGTTTAAGGTTGCACAGCTTGCACAGCTACCTTCTTCATGTATTCGCCGAGCCAACGTCATGGCTGCAGAATTGGAAGCAATGATTGTCAGCAGAGTGAAAAACAGTTCAGCACAAAAGACGTTACAAGGATCACAACAGAGCATCTCAATACAATCTGGTTGCTCCAGGGCAGAACAAATAGGCCTGGAAGAAGATGCTTGCAGGGAGTTCTTTTTGGACTTGAAATCAGCATTGGGCAATGCTGATCCCGAAAGAAGCCTCCAGTTTTTGAAGCATGCTAGAAGCATTGCAAAAGAGTTGATAGGCAGGTAA 3336 0.4394 MGKQKQQVISRFFAPKPKAPSSSSSSIPSSPSPSPSPSSLPNPPTPPPKISTTVTFSPSKRLPSSHVSPSTKPPKAPKISHPIDPSLHQKFVQKLLEPSSSTPTKLPLPTTKYTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPTFRLNVHVRRLVSAGFKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEEVGGGEEECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLEAVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLSENSRADHQVDNTEVMEQENHCLAIEGIMSMPDLAVQALALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLTTLGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSVLLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPEVAKARSLVQSAKEKLDLLIGLYRKQLRMNNLEFMSVSGTTHLIELPVDVKVPSNWVKVNSTKKTVRYHPPEVLSALDQLSLANEELMIACRGAWDSFLRAFDKYFSEFQAAVQALATLDCLHSLAILSRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDNFVPNDTNLHADGEYCEIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTSTHDGVAIAYATLHYLLEHKRCMVLFVTHYPKIVDVKNEFPGSVGAYHVSYMMSQRAMDMDTDTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAELEAMIVSRVKNSSAQKTLQGSQQSISIQSGCSRAEQIGLEEDACREFFLDLKSALGNADPERSLQFLKHARSIAKELIGR* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0871 1111 Gene3D DNA repair protein MutS, domain I 108 231 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 Gene3D - 429 765 - -
Vvi16g0871 1111 FunFam DNA mismatch repair protein 105 234 - -
Vvi16g0871 1111 SMART mutATP5 817 1030 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 Pfam MutS domain V 821 1033 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 MobiDBLite consensus disorder prediction 1 83 - -
Vvi16g0871 1111 Pfam MutS domain II 241 406 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 Gene3D MutS, connector domain 237 426 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 117 1049 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi16g0871 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 1033 IPR027417 -
Vvi16g0871 1111 FunFam DNA mismatch repair protein 237 424 - -
Vvi16g0871 1111 ProSitePatterns DNA mismatch repair proteins mutS family signature. 898 914 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 SUPERFAMILY DNA repair protein MutS, domain III 431 771 IPR036187 -
Vvi16g0871 1111 Gene3D - 615 741 - -
Vvi16g0871 1111 PIRSF Msh6 102 1072 IPR017261 GO:0006298|GO:0030983
Vvi16g0871 1111 MobiDBLite consensus disorder prediction 30 51 - -
Vvi16g0871 1111 FunFam DNA mismatch repair protein Msh3 615 741 - -
Vvi16g0871 1111 Pfam MutS domain I 114 225 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 SMART DNAend 447 800 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 Pfam MutS domain III 432 765 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 SUPERFAMILY DNA repair protein MutS, domain II 239 442 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 Gene3D - 773 1068 IPR027417 -
Vvi16g0871 1111 SUPERFAMILY DNA repair protein MutS, domain I 105 222 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi16g0871 1111 FunFam DNA mismatch repair protein MSH3 773 1060 - -
Vvi16g0871 1111 MobiDBLite consensus disorder prediction 52 71 - -
Vvi16g0871 1111 CDD ABC_MSH3_euk 787 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0871 Vvi-Chr16 16825838 16834775 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0871 K08736 - vvi:100266933 2075.44