LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0856	ATGGCTTCAGTTGAGGAATTTAGAAACGCTCAACGTGCCAAGGGTCCGGCCACCATCCTAGCCATTGGCACAGCTACCCCCGACCACTGTGTCTACCAGTCTGATTATGCTGATTACTATTTCAGGGTCACTAAGAGCGAGCACATGACTGAGTTGAAGAAGAAGTTCAATCGCATATGTGACAAATCAATGATCAAGAAGCGTTACATTCACTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGCCAAGAGATTATCACTGCTGAGGTACCTAGACTTGGTAGGGATGCAGCATTGAAGGCTCTTAAAGAGTGGGGCCAACCAAAGTCCAAGATCACCCATCTTGTATTTTGTACAACCTCCGGTGTAGAAATGCCCGGTGCAGATTACAAACTCGCTAATCTCTTAGGTCTTGAAACATCCGTTAGAAGGGTGATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACTGTCCTTCGAACTGCTAAGGATCTTGCAGAAAATAATGCAGGAGCACGAGTTCTTGTGGTATGCTCTGAGATCACTGTTGTTACATTCCGTGGGCCTTCCGAAGATGCTTTGGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGGTCTTCAGCTGTGATTGTTGGATCAGATCCAGATGTCTCGATTGAACGACCACTCTTCCAACTTGTTTCAGCGGCCCAAACATTCATTCCTAATTCAGCAGGAGCCATTGCCGGAAACTTACGTGAGGTGGGGCTCACTTTTCATTTGTGGCCCAATGTGCCTACTTTGATTTCTGAGAACATAGAGAAATGTTTGACCCAGGCTTTTGACCCACTTGGTATTAGCGATTGGAACTCGTTATTTTGGATTGCTCACCCAGGTGGCCCTGCAATTCTCGATGCAGTTGAAGCAAAACTCAATTTAGAGAAAAAGAAACTTGAAGCAACAAGGCACGTGTTAAGTGAGTATGGTAACATGTCTAGTGCATGTGTGTTGTTTATTTTGGATGAGATGAGAAAGAAATCCCTAAAAGGGGAAAAAGCCACCACAGGTGAAGGATTAGATTGGGGAGTACTATTTGGTTTTGGACCTGGCTTGACCATCGAAACTGTTGTGCTGCATAGCGTTCCTACGTGGAAGAAGGCCACCATCGGTGAAGGATTGGATTGGGGAGTATTATTCGGTTTTGGACCAGGCTTGACCATTGAAACTGTTGTGTTGCATAGCATTCCTACGTTTACAAACTAA	1281	0.4528	MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPRLGRDAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSSAVIVGSDPDVSIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSVPTWKKATIGEGLDWGVLFGFGPGLTIETVVLHSIPTFTN*	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0856	426	SUPERFAMILY	Thiolase-like	1	233	IPR016039	GO:0016746
	Vvi16g0856	426	Gene3D	-	236	390	IPR016039	GO:0016746
	Vvi16g0856	426	Gene3D	-	391	426	IPR016039	GO:0016746
	Vvi16g0856	426	PIRSF	PKS_III	2	389	IPR011141	GO:0009058\|GO:0016747
	Vvi16g0856	426	PIRSF	PKS_III	383	423	IPR011141	GO:0009058\|GO:0016747
	Vvi16g0856	426	Gene3D	-	1	235	IPR016039	GO:0016746
	Vvi16g0856	426	FunFam	Chalcone synthase 2	1	235	-	-
	Vvi16g0856	426	CDD	CHS_like	16	384	-	-
	Vvi16g0856	426	ProSitePatterns	Chalcone and stilbene synthases active site.	156	172	IPR018088	GO:0009058\|GO:0016746
	Vvi16g0856	426	PANTHER	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	4	387	IPR011141	GO:0009058\|GO:0016747
	Vvi16g0856	426	SUPERFAMILY	Thiolase-like	235	387	IPR016039	GO:0016746
	Vvi16g0856	426	Pfam	Chalcone and stilbene synthases, N-terminal domain	5	228	IPR001099	-
	Vvi16g0856	426	Pfam	Chalcone and stilbene synthases, C-terminal domain	238	388	IPR012328	-
	Vvi16g0856	426	Pfam	Chalcone and stilbene synthases, C-terminal domain	391	422	IPR012328	-
	Vvi16g0856	426	FunFam	Chalcone synthase 1	236	388	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0856	Vvi-Chr16	16618991	16624624	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0856	128	383	Acyl Lipid Metabolism Gene Families	AT1G71160	22.337	6.29e-08	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0856	K00660		K13232	vvi:104877274	772.696