Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0850 ATGGCGTCTGTGGACGAAATTAGAAATGCTCAGCGTGCCAAGGGTCCGGCCACCGTTCTAGCCATTGGCACAGCTACACCGGACAACTGTCTGTATCAGTCTGATTTCGCTGATTACTATTTTCGGGTCACTAAGAGCGAGCACATGACCGAGCTTAAGAAGAAGTTCAACCGCATTTGTGACAAATCAATGATCAAGAAGCGTTATATTCATTTGACGGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGCCAAGAGATTATCACTACTGAGGTACCCAAGCTTGGTAAGGAAGCAGCATTGAAGGCTCTAAAAGAGTGGGGTCAACCTATATCGAAGATCACCCACCTTGTATTTTGTACCACCTCGGGTGTAGAAATGCCTGGTGCAGATTATAAACTTGCTAATCTTTTAGGCCTCGAACCATCCGTCAGAAGAGTGATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACTGTCCTTAGAACCGCTAAGGATCTTGCGGAGAATAATGCAGGAGCACGAGTTCTTGTGGTATGCTCTGAGATCACTGTTGTTACATTCCGTGGGCCTTCTGAATCCGCTTTGGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGGTCTGCAGCTATGATCATTGGATCAGATCCAGATATCTCAATTGAACGACCACTCTTTCAACTTGTCTCAGCTGCCCAAACATTCATCCCCAATACCCAAGGTGCTATTGCAGGCAACTTACGTGAAGTGGGTCTCACTTTTCATTTATGGCCTAATGTGCCTACTTTAATTTCTGAGAACATAGAGAAATGTTTGACTCAAGCTTTTGACCCACTTGGTATTAGTGATTGGAACTCGTTATTTTGGATTGCTCACCCAGGTGGCCCTGCAATTCTTGACGCGGTTGAAGCAAAACTCAGTTTAGATAAGCAAAAACTCAATGCAACAAGGCATATTCTAAGTGAATATGGAAACATGTCAAGTGCATGTGTGTTGTTTATCTTGGATGAGATGAGAAAGAAATCGCTTAAGGAAGGAAAAACAACTACAGGCGAAGGATTGGATTGGGGTGTTTTGTTTGGCTTTGGACCAGGCCTAACCATCGAGACTGTTGTGCTGCATAGCATTTGTATGGATTCAAACTAA 1179 0.4419 MASVDEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITTEVPKLGKEAALKALKEWGQPISKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSESALDSLVGQALFGDGSAAMIIGSDPDISIERPLFQLVSAAQTFIPNTQGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLSLDKQKLNATRHILSEYGNMSSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSICMDSN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0850 392 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Vvi16g0850 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Vvi16g0850 392 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vvi16g0850 392 CDD CHS_like 16 384 - -
Vvi16g0850 392 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vvi16g0850 392 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Vvi16g0850 392 FunFam Chalcone synthase 2 1 235 - -
Vvi16g0850 392 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Vvi16g0850 392 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vvi16g0850 392 Gene3D - 236 390 IPR016039 GO:0016746
Vvi16g0850 392 Gene3D - 1 235 IPR016039 GO:0016746
Vvi16g0850 392 FunFam Chalcone synthase 1 236 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0850 Vvi-Chr16 16511216 16512602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0850 128 387 Acyl Lipid Metabolism Gene Families AT1G71160 23.279 5.79e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0850 K00660 K13232 vvi:100242903 777.319