Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0838 ATGGCGTCTGTGGAGGAAATTAGAAATGCCCAGCGTGCCAAGGGTCCGGCCACCGTTCTAGCCATTGGCACAGCTACCCCGGACAACTGTCTGTACCAGTCTGATTTCGCTGATTACTATTTTCGGGTCACTAAAAGCGAGCACATGACCGAGCTCAAGAAGAAGTTCAACCGCATTTGTGACAAATCCATGATCAAGAAGCGTTACATTCATTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGCCAAGAGATTATCACTGCTGAGGTACCCAAGCTTGGTAAGGAAGCAGCATTGAAGGCTCTTAAAGAGTGGGGTCAGCCTAAATCGAAGATCACCCACCTTGTATTTTGTACCACCTCAGGTGTAGAAATGCCTGGTGCAGATTATAAACTCGCTAATCTTTTAGGCCTCGAGCCATCTGTCAGAAGAGTGATGTTGTACCATCAAGGGTGCTATGCGGGTGGAACTGTCCTTCGAACCGCTAAGGATCTTGCAGAGAATAATGCAGGAGCACGAGTTCTTGTGGTGTGCTCTGAGATCACTGTTGTTACATTTCGTGGTCCTTCCGAAGATGCTTTGGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGGTCTGCAGCTGTAATCGTTGGATCTGATCCAGATATCTCGATTGAACGACCACTCTTTCAACTTGTTTCAGCAGCCCAAACATTTATTCCTAATTCAGCAGGTGCTATTGCAGGCAACTTACGTGAAGTGGGTCTCACCTTTCATTTGTGGCCTAATGTGCCTACCTTGATCTCTGAAAACATTGAGAATTGTTTGACTAAGGCTTTTGACCCAATTGGTATTAGTGATTGGAATTCCTTATTCTGGATTGCTCATCCAGGTGGCCCAGCTATTCTCGACGCAGTTGAAGCAAAAGTCGGTTTAGATAAACAGAAACTCAAAGCAACAAGGCATATTCTAAGTGAATATGGGAACATGTCAAGTGCATGTGTCTTATTTATTTTGGACGAGATGAGAAAGAAATCGCTCAAGGAAGGCAAAACGACGACAGGTGAAGGATTGGATTGGGGTGTCTTGTTTGGCTTTGGGCCAGGCCTAACCATTGAGACCGTTGTGCTCCATAGCGTGGGTACAGATTCAAACTAG 1179 0.4563 MASVEEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIENCLTKAFDPIGISDWNSLFWIAHPGGPAILDAVEAKVGLDKQKLKATRHILSEYGNMSSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSVGTDSN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0838 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Vvi16g0838 392 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Vvi16g0838 392 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vvi16g0838 392 FunFam Chalcone synthase 2 1 235 - -
Vvi16g0838 392 CDD CHS_like 16 384 - -
Vvi16g0838 392 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vvi16g0838 392 Gene3D - 1 235 IPR016039 GO:0016746
Vvi16g0838 392 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Vvi16g0838 392 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vvi16g0838 392 Gene3D - 236 390 IPR016039 GO:0016746
Vvi16g0838 392 FunFam Chalcone synthase 1 236 388 - -
Vvi16g0838 392 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0838 Vvi-Chr16 16386013 16387529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0838 128 383 Acyl Lipid Metabolism Gene Families AT1G71160 22.924 1.67e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0838 K00660 K13232 vvi:100853675 776.163