Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0835 ATGGCGTCTGTGGAGGAAATTAGAAATGTTCAGCGTGCCAAGGGTCCGGCCACCGTTCTAGCCATTGGCACAGCTACCCCGGACAACTGTCTGTACCAGTCTGATTTCGCCGATTACTATTTTCGGGTCACTAAGAGCGAGCACATGACCGAGCTCAAGAAGAAGTTCAACCGCATCTGTGATAAATCAATGATCAAGAAGCGTTACATTCATTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATCCGCCAAGAGATTATCACTGCTGAGGTGCCCAAGCTTGGCAAGGAAGCAGCATTGAAGGCCCTTAAAGAGTGGGGTCAGCCTAAATCGAAGATCACCCACCTTGTATTTTGTACCACCTCAGGTGTAGAAATGCCTGGTGCAGATTATAAACTCGCTAATCTTTTAGGCCTCGAACCATCTGTCAGAAGAGTGATGTTGTACCATCAAGGGTGCTATGCAGAAACTGCTTTAGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGGTCAGCAGCTGTAATCATTGGATCAGATCCCGATATCTCGATTGAACGACCACTCTTCCAGCTTGTTTCAGCAGCACAAACATTTATTCCAAATTCAGCAGGTGCTATTGCAGGCAACTTACGTGAAGTGGGTCTCACCTTTCAATTGTGGCCTAATGTGCCTAGTTTGATATCTGAAAACATAGAGAAGTGTTTGACTAAGGCTTTTGACCCAATTGGTATTAGTGACTGGAATTCCTTATTCTGGATTGCTCACCCAGGCGGCCCAGCTATTCTTGATGCGGTTGAAGCAAAACTCAGTTTAGATAAACAAAAACTCAAAGCAACAAGACATATTCTAAGTGAATATGGGAACATGTCAAGTGCATGTGTCTTGTTTATTTTGGATGAAATGAGAAAGAAATCGCTCAAGGAAGGAAAGACAACCACAGGTGAAGGATTGGATTGGGGTGTTTTGTTTGGCTTTGGGCCAGGCTTGACCATTGAGACCGTTGTGCTACATAGCGTTCAAATGGATTCAAACTAA 1071 0.4454 MASVEEIRNVQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAETALDSLVGQALFGDGSAAVIIGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFQLWPNVPSLISENIEKCLTKAFDPIGISDWNSLFWIAHPGGPAILDAVEAKLSLDKQKLKATRHILSEYGNMSSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSVQMDSN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0835 356 FunFam Chalcone synthase 1 200 352 - -
Vvi16g0835 356 FunFam Chalcone synthase 2 1 169 - -
Vvi16g0835 356 Gene3D - 1 167 IPR016039 GO:0016746
Vvi16g0835 356 CDD CHS_like 16 348 - -
Vvi16g0835 356 SUPERFAMILY Thiolase-like 199 350 IPR016039 GO:0016746
Vvi16g0835 356 Gene3D - 168 199 IPR016039 GO:0016746
Vvi16g0835 356 Pfam Chalcone and stilbene synthases, N-terminal domain 5 168 IPR001099 -
Vvi16g0835 356 PIRSF PKS_III 166 353 IPR011141 GO:0009058|GO:0016747
Vvi16g0835 356 PIRSF PKS_III 2 170 IPR011141 GO:0009058|GO:0016747
Vvi16g0835 356 Pfam Chalcone and stilbene synthases, C-terminal domain 202 351 IPR012328 -
Vvi16g0835 356 SUPERFAMILY Thiolase-like 1 197 IPR016039 GO:0016746
Vvi16g0835 356 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 167 351 IPR011141 GO:0009058|GO:0016747
Vvi16g0835 356 Gene3D - 200 355 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0835 Vvi-Chr16 16350059 16351428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0835 267 355 Acyl Lipid Metabolism Gene Families AT1G71160 34.444 2.94e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0835 K00660 K13232 vvi:100853526 681.019