Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0831 ATGACCGAGCTCAAGAAGAAGTTCAACCGCATCTGTGACAAATCCATGATCAAGAAGCGTTACATTCATTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGCCAAGAGATTATCACTGCTGAGGTACCCAAGCTTGGTAAGGAAGCAGCATTGAAGGCTCTTAAAGAGTGGGGTCAGCCTAAATCGAAGATCACCCACCTTGTATTTTGTACCACCTCAGGTGTAGAAATGCCTGGTGCAGATTATAAACTCGCTAATCTTTTAGGCCTCGAACCATCTATCAGAAGAGTGATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACTGTCCTTCGAACTGCCAAGGATCTTGCAGAGAATAATGCAGGAGCACGAGTTCTTGTAGTGTGCTCTGAGATCACTGTTGTTACATTTCGTGGGCCTTCAGAAAATGCTTTAGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGGTCAGCAGCTGTAATCATTGGATCAGATCCCGATATCTCGATTGAACGACCACTCTTCCAACTTGTTTCAGCAGCGCAAACATTTATTCCAAATTCAGCAGGTGCTATTGCCGGCAACTTACGTGAAGTGGGTCTCACCTTTCAATTGTGGCCTAATGTGCCTAGTTTGATATCTGAAAACATAGAGAAGTGTTTGACTAAGGCTTTTGACCCAATTGGTATTAGTGACTGGAATTCCTTATTCTGGATTGCTCATCCCGGTGGCCCAGCTATTCTTGATGCGGTTGAAGCAAAACTCACTTTAGATAAACAGAAACTCAAAGCAACAAGACATATTCTAAGTGAATATGGGAACATGTCAAGTGCATGTGTCTTGTTTATTTTGGACGAGATGAGAAAGAAATCGCTCAAGGAAGGAAAGACAACCACAGGTGAAGGATTGGATTGGGGTGTTTTGTTTGGCTTTGGGCCAGGCTTGACCATTGAGACCGTTGTGCTACATAGCGTTCAAATGGATTCAAACTAA 1035 0.4367 MTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSIRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSENALDSLVGQALFGDGSAAVIIGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFQLWPNVPSLISENIEKCLTKAFDPIGISDWNSLFWIAHPGGPAILDAVEAKLTLDKQKLKATRHILSEYGNMSSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSVQMDSN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0831 344 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 1 339 IPR011141 GO:0009058|GO:0016747
Vvi16g0831 344 CDD CHS_like 1 336 - -
Vvi16g0831 344 FunFam Chalcone synthase 1 188 340 - -
Vvi16g0831 344 Pfam Chalcone and stilbene synthases, N-terminal domain 1 180 IPR001099 -
Vvi16g0831 344 PIRSF PKS_III 1 341 IPR011141 GO:0009058|GO:0016747
Vvi16g0831 344 FunFam Chalcone synthase 2 1 187 - -
Vvi16g0831 344 SUPERFAMILY Thiolase-like 2 184 IPR016039 GO:0016746
Vvi16g0831 344 SUPERFAMILY Thiolase-like 187 338 IPR016039 GO:0016746
Vvi16g0831 344 ProSitePatterns Chalcone and stilbene synthases active site. 108 124 IPR018088 GO:0009058|GO:0016746
Vvi16g0831 344 Pfam Chalcone and stilbene synthases, C-terminal domain 190 339 IPR012328 -
Vvi16g0831 344 Gene3D - 1 187 IPR016039 GO:0016746
Vvi16g0831 344 Gene3D - 188 343 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0831 Vvi-Chr16 16289537 16290762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0831 80 335 Acyl Lipid Metabolism Gene Families AT1G71160 23.232 1.83e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0831 K00660 K13232 vvi:100853590 671.774