Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0830 ATGATCAAGAAGCGTTATAGTCATTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGTCAAGAGATTATTACTGCTGAGGTACCCAAGCTTGGTAAGGAAGCGGCATTGAAGGCTCTTAAAGAGTGGGGTCAACCCAAATCCAAGATTACCCATCTTGTATTTTGTACAACTTCGGGTGTAGAAATGCCCGGTGCCGACTATAAACTCGCTAATCTCCTAGGCCTTGAAACATCAGTCAGAAGAGTAATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACTGTCCTTCGAACCGCTAAGGATCTTGCTGAGAATAATGCAGGAGCACGGGTTCTCGTGGTGTGCTCTGAGATCACCGTTGTTACATTCCGTGGGCCTTCTGAAACTGCTTTGGACTCTTTAGTTGGCCAAGCCCTTTTTGGTGATGGTTCTGCAGCTGTAATTGTTGGATCAGATCCAAATCTCTCGATTGAACGACCACTCTTCCAGCTAGTCTCGGCGGCCCAAACATTCATCCCCAATACCCAAGGTGCTATTGCAGGCAACTTACGTGAAGTGGGTCTCACCTTTCATTTATGGCCTAATGTGCCAACTTTGATCTCCGAAAATATAGAGAAATGTTTGACTCAGGCTTTTGACCCAATTGGAATCAGCGATTGGAATTCCTTATTTTGGATTGCTCATCCAGGTGGCCCAGCTATTCTTGATGCAGTTGAAGCAAAATTGAGTTTGGATAAACAAAAACTTAAAGCAACAAGACATGTTCTAAGTGAATATGGGAACATGTCAAGTGCTTGTGTCTTGTTTATTATGGACGAGATGAGAAAGAAATCGTTGAAGGAAGAAAAAACAACAACAGGTGAAGGATTGGATTGGGGCGTCTTGTTTGGCTTTGGACCAGGCCTAACCATCGAGACTGTTGTCCTCCGCAGTATTCCTAGGGATTCCAATTGA 990 0.4434 MIKKRYSHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSETALDSLVGQALFGDGSAAVIVGSDPNLSIERPLFQLVSAAQTFIPNTQGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPIGISDWNSLFWIAHPGGPAILDAVEAKLSLDKQKLKATRHVLSEYGNMSSACVLFIMDEMRKKSLKEEKTTTGEGLDWGVLFGFGPGLTIETVVLRSIPRDSN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0830 329 CDD CHS_like 1 321 - -
Vvi16g0830 329 SUPERFAMILY Thiolase-like 172 323 IPR016039 GO:0016746
Vvi16g0830 329 FunFam Chalcone synthase 1 173 325 - -
Vvi16g0830 329 PIRSF PKS_III 1 326 IPR011141 GO:0009058|GO:0016747
Vvi16g0830 329 Gene3D - 1 172 IPR016039 GO:0016746
Vvi16g0830 329 FunFam Chalcone synthase 2 1 172 - -
Vvi16g0830 329 SUPERFAMILY Thiolase-like 1 168 IPR016039 GO:0016746
Vvi16g0830 329 Pfam Chalcone and stilbene synthases, N-terminal domain 1 165 IPR001099 -
Vvi16g0830 329 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 1 324 IPR011141 GO:0009058|GO:0016747
Vvi16g0830 329 Gene3D - 173 327 IPR016039 GO:0016746
Vvi16g0830 329 Pfam Chalcone and stilbene synthases, C-terminal domain 175 325 IPR012328 -
Vvi16g0830 329 ProSitePatterns Chalcone and stilbene synthases active site. 93 109 IPR018088 GO:0009058|GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0830 Vvi-Chr16 16286924 16287913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0830 65 324 Acyl Lipid Metabolism Gene Families AT1G71160 22.623 1.65e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0830 K00660 K13232 vvi:109121404 640.573