Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0827 ATGGCTTCAGTTGAGGAAATTAGAAACGCTCAACGTGCCAAGGGTCCGGCCACCATCCTAGCCATTGGCACAGCTACTCCCGACCACTGTGTCCACCAGTCTGATTATGCTGATTACTATTTCAGGGTCACTAAGAGCGAGCACATGACTGAGTTGAAGAAGAAGTTCAATCGTGTAGAAATGCCTGGTGCTGATTATAAACTTGCTAATCTCTTGGGTCTTGAAACTTCAGTTAGAAGAGTTATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACTGTCCTTCGAACCGCTAAAGATCTTGCAGAGAATAATGCAGGAGCACGAGTCCTTGTGGTGTGCTCTAAGATCACTGTTGTTACATTCCGAGGACCTTCCAAAGATTCTTTGGATTCTTTAGTTGGTCAAGCCCTTTTTGGTGATGGGTTTGCAGCTGTGATTGTTAGATCAGATTCAGATGTCTCGATTGAACGACCCTTCTTCTAG 486 0.4527 MASVEEIRNAQRAKGPATILAIGTATPDHCVHQSDYADYYFRVTKSEHMTELKKKFNRVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSKITVVTFRGPSKDSLDSLVGQALFGDGFAAVIVRSDSDVSIERPFF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0827 161 ProSitePatterns Chalcone and stilbene synthases active site. 80 96 IPR018088 GO:0009058|GO:0016746
Vvi16g0827 161 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 59 IPR011141 GO:0009058|GO:0016747
Vvi16g0827 161 Gene3D - 1 59 IPR016039 GO:0016746
Vvi16g0827 161 Pfam Chalcone and stilbene synthases, N-terminal domain 58 151 IPR001099 -
Vvi16g0827 161 Gene3D - 60 159 IPR016039 GO:0016746
Vvi16g0827 161 SUPERFAMILY Thiolase-like 1 157 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0827 Vvi-Chr16 16252494 16253565 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0827 K00660 K13232 vvi:100217471 189.889