Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0820 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGCGAACGGCTCGTCTCGGCGGCCAGAGACGGGGATTTGGTGGAAGCCAAGATGCTTCTTGACTGCAATCCATGTTTAGCCAAATATTCCACCTTCGGTGGACTCAATTCGCCTCTCCATTTCGCAGCCGCGAAGGGCCACAATGAGATTGTTGCTTTGCTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTACTGTGGACAGACGGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTTCAGACTCTACTGCTCTTCAGATGCAATGTCACAAGGGCAGACTACTTGAGCGGAAGGACAGCTCTACATTTTGCAGCGGTAAATGGGCATGTAAGATGCATAAGACTTGTAGTGGCTGACTTTGTCCCAAGTGCTCCTCATGAAGCTATAAATGTTCAAAATAATGGTGATAGAGGTGACGGTTCCAATTTAAAGAACAAATATGATCAGAGTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTTGATATCCATGCAAACGTGTCAGCTGTGACTTTTCACTATGGGACGTCAATGGATCTAATAGGAGCAGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGAAATTTAAAGTGCTGTCAGATCCTCCTTGCAAGAGGTGCCAGTCGGTTGACTTTAAACTGCAACGGGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCCAATTGCCTATCTTTGCCTCTCATGAGTGTACTTAATATAGCAAGAGAGTGTGGGTTGCAGTCCTCAACAACCTCCTCTGATGAAACAGATATTTGTGCTGTCTGCCTTGAGAGAGCATGTACAGTGGCTGCTGAAGGCTGTGGTCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAACATCCCATCCGAAATGGTGGGCCCACCTGGGTCCATTCCATGCCCTCTATGTCGACATGGGATTACCTCTTTCGTCAAATTGCCTGGTTCCCCAGCAAAGGAAATCAAACTACACCTGTCTCTTGGCCTCTGCACCCCATGCATGCTGCACCCCCGTGAATCAGACCGGCCATCACCTGCATGTACTCCCGAGATCCGAAAGAATCGTGTGGCTTCAGTTTCTTCAGATATTCTCTGCCCTGTCTCTTGTAGCCCATTTCCTTCTGTCACCATCCCTTTGTGCACCTGTGATGATGGCCCCTGCCCATCTTTTGAACCCCGGGAGGTAGAAACACAAGATGAGTCTCCTCGTCGTTCACAAACCACATCAATAGATCAGGATAAAATGGAAGGAGCAAGACTGGAAAGAACAAGCTGTTCAAGCATGTTTTGGGGCAGAAGAAGCTGTAGCAGGGAGCATCAATGCAACTCCGAAATAAATGCTTGA 1539 0.4782 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPHEAINVQNNGDRGDGSNLKNKYDQSALAKFVNKAADGGITALHMAALNGYFDCVQLLLDIHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRLTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPVFPPSNCLSLPLMSVLNIARECGLQSSTTSSDETDICAVCLERACTVAAEGCGHELCVRCALYLCSTSNIPSEMVGPPGSIPCPLCRHGITSFVKLPGSPAKEIKLHLSLGLCTPCMLHPRESDRPSPACTPEIRKNRVASVSSDILCPVSCSPFPSVTIPLCTCDDGPCPSFEPREVETQDESPRRSQTTSIDQDKMEGARLERTSCSSMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0820 512 MobiDBLite consensus disorder prediction 456 485 - -
Vvi16g0820 512 Coils Coil 511 512 - -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat profile. 220 246 IPR002110 GO:0005515
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Vvi16g0820 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Vvi16g0820 512 SUPERFAMILY RING/U-box 315 375 - -
Vvi16g0820 512 Gene3D - 146 270 IPR036770 -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vvi16g0820 512 SMART ring_2 319 368 IPR001841 -
Vvi16g0820 512 Pfam Ankyrin repeats (3 copies) 212 266 IPR002110 GO:0005515
Vvi16g0820 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 387 IPR013083 -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Vvi16g0820 512 Gene3D - 7 145 IPR036770 -
Vvi16g0820 512 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 111 287 - -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Vvi16g0820 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vvi16g0820 512 SMART ANK_2a 220 252 IPR002110 GO:0005515
Vvi16g0820 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vvi16g0820 512 SMART ANK_2a 111 142 IPR002110 GO:0005515
Vvi16g0820 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vvi16g0820 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Vvi16g0820 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Vvi16g0820 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Vvi16g0820 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Vvi16g0820 512 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Vvi16g0820 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Vvi16g0820 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Vvi16g0820 512 FunFam E3 ubiquitin-protein ligase XBAT32 149 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0820 Vvi-Chr16 16163811 16171561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0820 17 364 Miscellaneous Gene Families AT5G02620 24.725 1.35e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0820 K19044 - vvi:100252095 1066.99