Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0819 ATGCCAATCTTCTACTCTTCACCGATCAACCCCCTCAAATCGGTGTCGTTTCTTATCCGAAGCCTCACTTGGACGAGACCCATGTCGCAATCCACCTCCATTCCCAAGAAGCTCCAGCGTGTTCGCGATCACGGCTATGACAACTACATGGAAGTCGAGAAGAAGCTTCGCAAAATCCTCAAATTCCAAGACCTCTTTCTCTGCCAACCCCATCAAACCCTCCCAGTCTCTCGCCTGGACACCCTCGCTCGTCGCCTCGACTTCAAACAACACGAAGCTGGTGCATTCATCCTCAAATTCCCTCATGTTTTTGAGATATATGAACACCCAGTTCGACGTATCCTCTATTGCCGCCTTACCCGCAAAGCCCACCTCCAAATCGAACAAGAAAATCGGGCTCTCAATGACCAAATTCCCGACGCCGTCACTCGCCTCCGAAAGCTTCTAATGATGTCGAACACGGGTCGGCTTAGGCTGGAACACATCCGAATTGCTCGGCGCGAATTGGGTCTTCCTGATGACTTTGAGTATTCGGTAATTCTCAAGAACCCCCAGTTTTTTCGATTGTTTGATGCCAAGGAAACTAGAAATAAGTACATTGAGATTGTTGAGAGTGACCCGACTTTAGCTGTGTGTGCAATTGAGAAGCTTCGGGAGAAGGAGTATAGGGAAAAAGGGATTGATGCCGAGGATATAAGGTTTTCATTTATTGTGAATTTTCCACCAGGGTTTAAGATTGGTAAGTATTATAGAATTGCAGTGTGGAAATGGCAACGGATTCCATATTGGTCTCCATATGAGGATGTGTCTGGGTATGATTTGAGGTCATTGGAGGCACAGAAGCGGATGGAGAAGAGGGCCATTGCAACGATTCATGAATTGTTGTCTTTGACTGTGGAGAAGAAGATTTCTTTGGAGAGGATTGCTCATTTTCGGCAAGCAATGAACTTGCCAAAGAAGCTTAAGGAGTTTCTTCTTCAGCATCAGGGAATATTTTATATTTCAACTAGAGGGAATTTTGGGAAGCTTCATACAGTTTTTCTTCGGGAGGCATATAAGAAGGGTGAATTGATAGAGCCAAATGATTTGTATTTGGCCAGGAGAAAGTTGGCCGAGTTGGTCTTGTTGAGTCCTAGGAAAGCAAATGTGGATAGGGAATTGGTTAACTATAGAAGGGACAGGGAAGATGATGAAATGGTGAGGATTCAAAGTGATTATGTTGAGAGTCGATTTGAAGGTTTTGTGGATGAAAACAATTTTAGGCAAGATGGTGAGAGAGGACGAGATTCAGACTTGAATTTGGATAGTGATGCTGGTTCTGATTTTTCAGATGAGGATAACAAATGTGAGGAAACAGTAGATGCTGAGATTTGA 1374 0.4432 MPIFYSSPINPLKSVSFLIRSLTWTRPMSQSTSIPKKLQRVRDHGYDNYMEVEKKLRKILKFQDLFLCQPHQTLPVSRLDTLARRLDFKQHEAGAFILKFPHVFEIYEHPVRRILYCRLTRKAHLQIEQENRALNDQIPDAVTRLRKLLMMSNTGRLRLEHIRIARRELGLPDDFEYSVILKNPQFFRLFDAKETRNKYIEIVESDPTLAVCAIEKLREKEYREKGIDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRIPYWSPYEDVSGYDLRSLEAQKRMEKRAIATIHELLSLTVEKKISLERIAHFRQAMNLPKKLKEFLLQHQGIFYISTRGNFGKLHTVFLREAYKKGELIEPNDLYLARRKLAELVLLSPRKANVDRELVNYRRDREDDEMVRIQSDYVESRFEGFVDENNFRQDGERGRDSDLNLDSDAGSDFSDEDNKCEETVDAEI* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0819 457 MobiDBLite consensus disorder prediction 418 457 - -
Vvi16g0819 457 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 25 396 IPR045040 GO:0003723
Vvi16g0819 457 Pfam Plant organelle RNA recognition domain 41 377 IPR021099 GO:0003723
Vvi16g0819 457 MobiDBLite consensus disorder prediction 418 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0819 Vvi-Chr16 16150919 16152292 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0819 - - vvi:100245174 917.916