Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0805 ATGGCGGACGAAGAGTACAACGACGTGGATATGGGATATGAGGATGAGCCGCCAGAGCCTGAGATTGAAGAGGGTGCAGAGGAAGAAGCCGAAAATAATAACAATGAAGATGTTCCAGATGCTCTTGAAGAGCAAGAAAAAGAAGTACATGAGACGGTAGAACGGCCCAGAAAGACTTCAAAGTATATGACAAAATATGAGAGAGCAAGAATCTTGGGTACCCGTGCTCTGCAGATCAGCATGAATGCGCCTGTGATGGTTGAATTGGAGGGTGAGACAGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGCCGCTACCTGCCTGATGGAAGTTATGAAGATTGGGGAGTGGATGAATTGATTGTAGAGGATTCATGGAAGAGGCAAGTTGGAGGTGATTGA 429 0.4662 MADEEYNDVDMGYEDEPPEPEIEEGAEEEAENNNNEDVPDALEEQEKEVHETVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0805 142 PIRSF RpoK/RPB6 1 133 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 64 78 IPR020708 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 SUPERFAMILY RPB6/omega subunit-like 1 132 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 MobiDBLite consensus disorder prediction 1 42 - -
Vvi16g0805 142 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 61 116 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 132 - -
Vvi16g0805 142 PIRSF RPB6 1 133 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Vvi16g0805 142 MobiDBLite consensus disorder prediction 43 60 - -
Vvi16g0805 142 Pfam RNA polymerase Rpb6 59 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 133 - -
Vvi16g0805 142 Gene3D - 3 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vvi16g0805 142 MobiDBLite consensus disorder prediction 1 60 - -
Vvi16g0805 142 SMART RNA_pol_Rpb6_2 57 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0805 Vvi-Chr16 16018209 16022091 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0805 K03014 - vvi:100253791 247.284