Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0798 ATGTGTCAGCCACCTTCATCTCCTCTATCACCCAAATGCAATTCAAACCATGGTTATCCTCAAAAAATGAAAGAGCCAGAGCCCCACATGGGCACCCCATTGATCCCCAAAAGCCCAACATCTAACCAACAGCAATATACACAAACCCACCTCTCTCTAGCCATTAGAGAAGCCAACTCCATAGCTAAAATTGCTCTTCCCATGATACTCACAGGCCTTCTACTCTACTCTCGTTCGATGATCTCCATGCTCTTCCTTGGCCGCCTCGGAGAGCTAGCTTTGGCCGGCGGTTCTCTAGCCGTCGGCTTTGCTAACATCACTGGTTACTCTATTCTCTCTGGCCTCGCCATGGGAATGGAACCCATTTGTGGACAAGCTTTTGGAGCCAAGAGACATGCCCTCCTTGGCCTCTCTCTTCAGAGAACTGTGCTTTTGCTCCTCTTCACTTCACTTCCCATAGCCTTTCTTTGGTTAAACATGAAGAGAATTCTACTCTTCTGTGGCCAAGATGAAGATATAGCTGCAGAAGCTCAATCATATCTCCTCTATTCTCTTCCTGACCTCTTTGCTCAATCTCTTCTTCACCCATTACGGATCTACCTTCGAACTCAATCCATAACTCTGCCTCTCACATTCTGCGCTACTATGTCAATTTTTATGCACATACCCATTAATTACCTTCTTGTTTCGCATCTCAATTTAGGAATCAAAGGCGTTGCTCTTAGTGGGGTTTGGACTAACTTCAACCTTGTAGGTTCTTTAATCATCTACTTACTCATCTCCGGCGTGTACAAGAAAACTTGGGGAGGATTATCCATGGAGTGCCTGAGAGGGTGGAAACCTCTCCTGAATTTAGCTGTTCCCAGCTGCATTTCAGTCTGCCTCGAATGGTGGTGGTATGAAATCATGATTCTTCTTTGTGGGTTGCTGCTCAACCCAAGAGCAACCGTTGCTTCAATGGGGATTCTGATTCAAACCACTTCACTCATCTACATATTTCCATCTTCTCTGAGCTTCAGCGTATCCACAAGGGTCGGCAACGAGCTGGGCGCCAACCAGCCAAACAAAGCCAAGTGTGCCGCCATTATAGGCCTGGCCTGCAGCTTCACACTTGGGTTTTCAGCACTGCTGTTCGCAGTCATGGTGAGGAACGTATGGGCAAGCATGTTCACACAAGACGCAGAGATCATAGCCTTGACATCAATGGTCCTCCCCATAATCGGTCTGTGTGAGCTTGGAAACTGCCCACAAACAACAGGATGCGGGGTGCTGAGAGGCACAGCCAGGCCAAGAGTTGGAGCAAACATCAACCTGGGTTGCTTCTATCTGGTTGGAACCCCAGTTGCAGTAGGGCTAGGGTTCTACGCAGGGTTCGACTTTGAGGGTCTGTGGCTCGGTCTCTTAGCCGCACAGGCCTCATGCGTGGTGACCATGCTGGTTGTTTTGAATCGAACAGATTGGGAGGTAGAAGCCCAGAGAGCTAAACAGCTGACTTCAGGCCCTCTGGTTCCCGATGAGGAAGACGACCTATTAATCAAACCTGAAATTAAGGTGAATTCTTACAGTCTGGCCGGTGATTTAGATGCTCCTCACTCACCTGTTTAA 1605 0.4822 MCQPPSSPLSPKCNSNHGYPQKMKEPEPHMGTPLIPKSPTSNQQQYTQTHLSLAIREANSIAKIALPMILTGLLLYSRSMISMLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAKRHALLGLSLQRTVLLLLFTSLPIAFLWLNMKRILLFCGQDEDIAAEAQSYLLYSLPDLFAQSLLHPLRIYLRTQSITLPLTFCATMSIFMHIPINYLLVSHLNLGIKGVALSGVWTNFNLVGSLIIYLLISGVYKKTWGGLSMECLRGWKPLLNLAVPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPNKAKCAAIIGLACSFTLGFSALLFAVMVRNVWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPRVGANINLGCFYLVGTPVAVGLGFYAGFDFEGLWLGLLAAQASCVVTMLVVLNRTDWEVEAQRAKQLTSGPLVPDEEDDLLIKPEIKVNSYSLAGDLDAPHSPV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0798 534 CDD MATE_eukaryotic 57 493 IPR045069 GO:0042910|GO:1990961
Vvi16g0798 534 PANTHER MULTIDRUG RESISTANCE PROTEIN 55 487 - -
Vvi16g0798 534 MobiDBLite consensus disorder prediction 1 42 - -
Vvi16g0798 534 MobiDBLite consensus disorder prediction 1 17 - -
Vvi16g0798 534 Pfam MatE 288 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0798 534 Pfam MatE 67 227 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g0798 534 NCBIfam MATE family efflux transporter 67 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0798 Vvi-Chr16 15919962 15921566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0798 K03327 - vvi:100248568 1049.27