LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0797	ATGGAGGATGAAAGGGATGCTGAGGATGCAATTCGAGGACTTGATAGAACAGGCTTTGGAAGAAAAGGGCGCAGGCTTCGTGTCGAGTGGACAAAGCAAGAACGTGGCATTAGAAGGCCTAGTGGTTCTAGAAGATCTTCAACCAATTTAAGACCTGCAAAGACACTGTTCGTTATTAATTTTGATCCATATAATACTAGGACAAGGGACTTGGAGAGACACTTTGATCCATATGGGAAAATATTAAACATAAGGATCAGAAGGAATTTTGCATTTATTCAGTATGAATCACAAGAGGATGCCACTAGAGCATTGGAGGCTACAAACATGAGCAAGTTGATGGATCGAGTTATTTCGGTGGAATATGCAGTTCGAGATGATGACGAAAGGAGAAATGGATATAGCCCTGATGGACGGAGGCGCGATAAGTCATCTGAGAGAAGCTATGACAAAGGACGATCCTTGAGTCCCTACCGGAGGGAGAGAGGTAGTCCTGATTATGGTCGTGGCTCTAGCCCAAGTGCCTACAGAAGAGAGAGAGCCAGTCCTGATTATGGCCGTGACCCTAGCCCTAGTCCACGTCGAAGAGATAGGGCTATCCCTGATCATGGCCGTAGTCGTAGTCCTAGTCATCATCGAAGAGAGAGGACTAGCCATGATTCAGCTCGTGGCCCCAGCCGGAGTCCATATCGAAGTGAAAGAAGTGACAGGGCCATTCCTGATTATGGCCGCGGTCGCAGTCCAAGTCCTGGACGGAGAGAGAAGATTATGCCTGACTATCCGGACAGACCCAGTCTGAGTCCTGAGCGAAAAGAGAAGACAGGACGATCAGAGAAGGCTATTCCTGATTATGGCCGTGGAGCTAGCCCAAGTTCCCCTCGTCGAGAGAGGACTAACTCTGATTATGTTCGTGCCAATAGCCGCAGCCGCAGTCGCAGCCAGAGCCAAAGTCCACGACAAAGAGAGAGGACTAAGCCTGATTATGGCCATGAAAGGAGTGTGAGTCCTGAACAAAGAGAGAAGGCCAATCCTGATTATGGGCGTGGTCCTAGCCGAAGTTCCCCACGTAGAGAGTATGACCGTGGTCCCAGCCAAAGTCCCCAGCAAGGTGAGAGGGCCCTTCCTGATTATAGCCGTGGCCCCAGCGACAGTCCATATCAAAGAGAGAGTATCAGTCCTGACTATGACCGTGGTCCCAGCCCAAATTCCAAGCGTGAAGAGAGGGACAGTCCCAATTATGGTGGATCTGCAAGCCCCATGAATGGGAGATACCGGAGTCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAG	1314	0.5	MEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRRDRAIPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKIMPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREKANPDYGRGPSRSSPRREYDRGPSQSPQQGERALPDYSRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS*	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0797	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	54	125	IPR000504	GO:0003723
	Vvi16g0797	437	MobiDBLite	consensus disorder prediction	180	280	-	-
	Vvi16g0797	437	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	1	422	-	-
	Vvi16g0797	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	56	118	IPR000504	GO:0003723
	Vvi16g0797	437	Gene3D	-	43	135	IPR012677	-
	Vvi16g0797	437	SUPERFAMILY	RNA-binding domain, RBD	39	131	IPR035979	GO:0003676
	Vvi16g0797	437	MobiDBLite	consensus disorder prediction	128	437	-	-
	Vvi16g0797	437	MobiDBLite	consensus disorder prediction	128	166	-	-
	Vvi16g0797	437	MobiDBLite	consensus disorder prediction	315	359	-	-
	Vvi16g0797	437	SMART	rrm1_1	55	121	IPR000504	GO:0003723
	Vvi16g0797	437	FunFam	Serine/arginine-rich splicing factor RS31	46	136	-	-
	Vvi16g0797	437	CDD	RRM2_AtRSp31_like	55	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0797	Vvi-Chr16	15906271	15907991	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0797	K12893		-	vvi:100255597	780.785