Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0789 ATGGATTCGCAGGTGGAGACAGAGGCAAAGCCAGATATTGAGGACCCTGAGAAGAAGAAAAAGAAAGAGGAAAAGGCAAAAGCAAAGGAATTGAAAAAACTCAAGGCTTTACAAAAGGCGGAGGCAGCCAAACTTCAGGCACAACAAGCATCGTCAAATGCCTCAAAAAAAAGTGAGAGGAAAATAAAGCGAGATGCTGAGGGAGAGAATGCCGAGGATTATATTGACCCAGAAACACCTTTTGGTGAGAAGAAACGTCTTTCTCGTCAGATGGCAAAGCAATATAGTCCAAGTGCAGTAGAGAATTCATGGTATGAATGGTGGGAAAAATCAGGCTTCTTTGTGGCAGATTCTAGCAGCTCCAAACCGCCATTTGTGATTGTTCTGCCACCTCCAAATGTAACTGGGGCCCTGCATATAGGTCATGCCCTTACCTCTGCCATACAGGATACAATTATCCGTTGGCGGAGAATGTCGGGATACAATGCCTTATGGGTTCCTGGAATGGACCATGCTGGGATAGCAACTCAGGTCGTTGTGGAGAAGAAGTTAATGCGGGAAAGGAAATTAACCAGACATGATATTGGCCGTGAGAACTTTGTATCTGAAGTTTGGAATTGGAAGAATGAGTATGGGGGGGTCATATTGAAACAACAACGACGTATGGGTGCTTCTCTTGATTGGACCCGTGAGTGTTTTACAATGGATGAGAAAAGGTCATTGGCTGTTACAGAGGCTTTTGTTAGGCTTTACAAGGAGGGTCTTATCTATAGGGATCTTCGATTAGTGAATTGGGATTGCATCTTGCGAACAGCAATATCTGATATTGAGGTAGACTATGAGGACATCAAAGTTAGGACTCTCTTAAAGGTTCCTGGATATGAAAAGCCAGTGGAGTTTGGTGTTTTAACATCGTTTGCTTATCCTATAGAAGGAGGGGAAGAGATAGTTGTGGCCACTACTAGAGTGGAAACAATGCTTGGTGATACTGCTATTGCTGTACATCCTGATGATGAAAGGTACACGCGTTTTCATGGAAAATTCGCCATTCATCCATTTAATGGAAGGAAACTTCCTATTATTTGTGATGCAATACTCGTTGATAAGAATTTTGGGACTGGTGCTGTTAAGATAACTCCAGCCCATGATCCAAATGATTTTGAGGTTGGGAAGCGTCATAATCTTGAGTTCATCAACATTTTCACCGATGATGGGAAAATAAATAGCAATGGTGGTCCAGAGTTTGCAGGGATGCCACGTTTCAAAGCCCGTGAGGCTGTGGTTGCAGCATTACACGAAAAGGGACTCTATAAAGGCGCAAAAGATAATGAGATGCGTCTAGGCCTTTGTTCAAGGACCAAGGATGTTGTGGAGCCACTGATAAAGCCTCAGTGGTATGTTAGTTGCAGTGGAATTGCCAATGAAGCTCTTGATGCTGTTATGGATGATGAGAATAGGAAAATTGAGATTATTCCAAAGCAGTATGCTGCTGACTGGAAAAGATGGCTTGAGAACATTCGAGATTGGTGCGTCTCAAGGCAACTTTGGTGGGGCCACCGCATTCCTGCATGGTATGTGACATTGGAGGATGACAAAATGAAGGAACTTGGTGCATACACTGACCACTGGGTGGTTGCTAGAAATGAGGAAGAGGCTCAAATTGAGGCTAGCAGAATGTTTCCTGGGAAGAACTTTCAGATATCTCAAGATCCTGATGTACTGGACACATGGTTTTCTTCTGGTCTCTTCCCATTAACTGTGTTGGGCTGGCCAGATGATACACAAGATTTGAAGGCATTTTATCCAACTTCAGTTCTGGAAACTGGGCATGACATTCTCTTTTTCTGGGTTGCTCGGATGGTGATGTTAGGTATTAAGCTGGGAGGTGATGTGCCTTTTAGAAAGGTTTATTTGCATCCCATGATTCGTGATGCACATGGGCGTAAGATGTCTAAGTCGTTGGGAAATGTTATTGACCCTCTTGAAGTGATAAATGGGATATCCCTTGAAGGTCTTCACAAGAGGTTGGAAGAGGGTAACTTGGATCCCAGTGAACTGGTAGTTGCCAAAGAGGGACAGGTGAAGGACTTCCCTAATGGTATTGCTGAATGTGGTGCAGATGCTCTTCGTTTTGCTCTTGTGACTTATACAGCACAGTCTGATAGAATAAATTTGGATATCCAAAGAGTTGTTGGGTATCGCCAATGGTGTAATAAACTGTGGAATGCTATACGATTTGCTATGAGCAAGCTTGGAGATGATTACACCCCACCGATGGAAATAGTTCCAGATGTTATGCCATTTACCTGCCAATGGATACTCTCTGTACTGAACAAGGCTATATCAAAAACAGTGTCATCAATGGATTCATATGAATTTGCGGATGCTGCCAGCACAGTATATTCATGGTGGCAGTTCCAATTGTGTGATGTATTCATTGAAGTAGTTAAACCTTTCTTCTCTAGTAATGATCCTAAATTTGCATCTGCGAGGAGGTTTGCCCAAGATACACTGTGGGTATGTTTGGACAATGGGCTGCGGTTGCTTCATCCATTTATGCCATTTGTTACAGAAGAATTGTGGCAGCGCCTTCCTCCAGCAAGAGATTGTGCTAGGAAAGAATCAATTGTGATATCCGACTACCCATCAGTTGTACAGTGTTGGACAAATGAAAGAGTAGAGTATGAGATGGACCTCGTGGAGTCTACTGTGAAATCACTTAGGTCTCTCAGGTCTTTGATGCCTGCTAAGGAACGGCATGAAAGGCGACCAGCTTATGTGCTTTGCCGGACGGATGCAATTGCAGAAATTATAAATAGCTATGAACTGGAGATTTTGACTCTTGCCACTTTATCATCCTTGAAGGTTCTTAATGAGGGTGATGATGCTCCTATCGGATGTGCTGTATCAGTAGTAAACGAGAGCCTTTCTGTCTATCTCAAGCTTCAGGGAGCTCTTAACGCAGAAGCAGAGCGAGAAAAACTCAGGAAAAAGATGGAGGAGATAAGAAAGCAACAGGAGCATCTAACACAAATCATGAGTGCTTCTGGGTACCAAGAAAAGGTTCCGGCCCGTATTCATGAAGAAAATGTAGCCAAGTTATCATCATTGATGCAAGAACTTTTGTCGTTTGAACAAGCTAGCCAGCATCTGGAACGTGATATTGCAGCAGAACAAGAATCCCATTGA 3189 0.4324 MDSQVETEAKPDIEDPEKKKKKEEKAKAKELKKLKALQKAEAAKLQAQQASSNASKKSERKIKRDAEGENAEDYIDPETPFGEKKRLSRQMAKQYSPSAVENSWYEWWEKSGFFVADSSSSKPPFVIVLPPPNVTGALHIGHALTSAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRENFVSEVWNWKNEYGGVILKQQRRMGASLDWTRECFTMDEKRSLAVTEAFVRLYKEGLIYRDLRLVNWDCILRTAISDIEVDYEDIKVRTLLKVPGYEKPVEFGVLTSFAYPIEGGEEIVVATTRVETMLGDTAIAVHPDDERYTRFHGKFAIHPFNGRKLPIICDAILVDKNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGPEFAGMPRFKAREAVVAALHEKGLYKGAKDNEMRLGLCSRTKDVVEPLIKPQWYVSCSGIANEALDAVMDDENRKIEIIPKQYAADWKRWLENIRDWCVSRQLWWGHRIPAWYVTLEDDKMKELGAYTDHWVVARNEEEAQIEASRMFPGKNFQISQDPDVLDTWFSSGLFPLTVLGWPDDTQDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPSELVVAKEGQVKDFPNGIAECGADALRFALVTYTAQSDRINLDIQRVVGYRQWCNKLWNAIRFAMSKLGDDYTPPMEIVPDVMPFTCQWILSVLNKAISKTVSSMDSYEFADAASTVYSWWQFQLCDVFIEVVKPFFSSNDPKFASARRFAQDTLWVCLDNGLRLLHPFMPFVTEELWQRLPPARDCARKESIVISDYPSVVQCWTNERVEYEMDLVESTVKSLRSLRSLMPAKERHERRPAYVLCRTDAIAEIINSYELEILTLATLSSLKVLNEGDDAPIGCAVSVVNESLSVYLKLQGALNAEAEREKLRKKMEEIRKQQEHLTQIMSASGYQEKVPARIHEENVAKLSSLMQELLSFEQASQHLERDIAAEQESH* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0789 1062 FunFam Valine--tRNA ligase, mitochondrial 680 916 - -
Vvi16g0789 1062 Gene3D - 980 1051 IPR037118 -
Vvi16g0789 1062 CDD Anticodon_Ia_Val 725 864 IPR033705 -
Vvi16g0789 1062 Gene3D - 299 442 IPR009008 GO:0002161|GO:0006418
Vvi16g0789 1062 Pfam tRNA synthetases class I (I, L, M and V) 104 725 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi16g0789 1062 Gene3D - 682 915 - -
Vvi16g0789 1062 MobiDBLite consensus disorder prediction 1 39 - -
Vvi16g0789 1062 Gene3D HUPs 530 679 IPR014729 -
Vvi16g0789 1062 Coils Coil 20 57 - -
Vvi16g0789 1062 CDD ValRS_core 123 725 - -
Vvi16g0789 1062 MobiDBLite consensus disorder prediction 56 70 - -
Vvi16g0789 1062 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 298 447 IPR009008 GO:0002161|GO:0006418
Vvi16g0789 1062 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 132 143 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi16g0789 1062 PRINTS Valyl-tRNA synthetase signature 452 465 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 PRINTS Valyl-tRNA synthetase signature 601 619 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 PRINTS Valyl-tRNA synthetase signature 570 591 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 PRINTS Valyl-tRNA synthetase signature 125 136 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 PRINTS Valyl-tRNA synthetase signature 335 352 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 PANTHER VALYL-TRNA SYNTHETASES 67 1053 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 Coils Coil 1034 1054 - -
Vvi16g0789 1062 FunFam Valine--tRNA ligase, mitochondrial 299 439 - -
Vvi16g0789 1062 Hamap Valine--tRNA ligase [valS]. 91 1052 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 MobiDBLite consensus disorder prediction 1 81 - -
Vvi16g0789 1062 FunFam Valine--tRNA ligase, mitochondrial 93 291 - -
Vvi16g0789 1062 Coils Coil 985 1012 - -
Vvi16g0789 1062 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 737 1002 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi16g0789 1062 Gene3D HUPs 92 291 IPR014729 -
Vvi16g0789 1062 SUPERFAMILY Nucleotidylyl transferase 90 735 - -
Vvi16g0789 1062 NCBIfam valine--tRNA ligase 91 1034 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vvi16g0789 1062 FunFam Valine--tRNA ligase, mitochondrial 417 650 - -
Vvi16g0789 1062 Pfam Anticodon-binding domain of tRNA ligase 771 917 IPR013155 GO:0004812|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0789 Vvi-Chr16 15763168 15813223 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0789 K01873 - vvi:100257207 2087.77