Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0780 ATGGGGATTGGTAGCGAGAAGCAACCATGGGTCAATGGTTTCCGAATTCACGAGACAAAGTTGGTCAAGGTGCATGAATCAAATCAAAGGGATTTGGTTTCTTGGAACACTTTGATTTGTGGTTATAGTCAGTACAATAAATATAAGGAGGTGTTACGTCTTTTTGATGCTATGACAGCAGCAAATATAAAGGCTGATGCAGTGACTATGGTGAAGATTATTTTAGCTTGTAGCCATTTGGGTGATTGGGAGTTTGCTGATTCAATGGTGAAGTACATAAAGGAAAATAATCTTGAGATTGATGTTTACTTGGGAAACACTTTGATTGATATGTATGGGAGGCGTAGTTTAGCTGAATTGGCACAAGGAGTTTTTGATAGGATGCGGGAAAGGAATATTGTTTCTTGGAACGCCTTGGTCATGGGGCATGCAAAAGTGGGAAATTTAACTGCAGCTCGGAAGCTTTTTGATAACATGCCGAAGAGGGATGTGATCTCTTGGACCTCTATGATAACAGGTTACTCTCAAGCTAGCCAATTTTCAGATGCAGTGAAGCTTTTTCAAGAAATGATGGCAGCTAAGGTGAAACCTGATAAAGTTACAGTGGCTAGTGTGCTTTCAGCTTGTGCCCATCTAGGCAAGCTGGATGTGGGATGGGCTGTTCACCACTATATTCGCAGGCATGGTGTACAAGCAGATATTTATGTGGGGAACTCCTTAATAGATATGTACTGCAAATGTGGGATGGTAGAGAAGGCATTGGAAGTGTTTCACAGAATGAAAGATAAGGACTCTGTGTCATGGACTTCTGTCATTTCAGGCCTTGCTGTGAATGGTTTTGCGAATTCTGCACTTGACCTCTTCTCACAAATGTTGAGAGAAGGTGTTCAGCCAACCCATGGAACCTTTGTTGGGATTTTACTAGCTTGTGCCCATGCTGGGTTGGTGAATAAAGGTTTGGAATACTTTGAAAGTATGGAAAGTGTTCACGGATTAGTACCAGCTATGAAGCATTACGGGTGTGTGGTTGATCTCTTGAGCCGCTCAGGCAACATAGATAAGGCATATGAGTTCATAAAGAAAATGCCAATAGTTCCTGATGTTGTAGTATGGAGGATTTTGCTGAGTGCTTGTAAGCTTCATGGAAATGTTGTCCTAGCTGAGATTGCCACCAAGAGGCTTCTTGAATTGGATCCATGTGATAGTGGGAATTATGTTCTTCTATCTAATACCTATGCAGGGGTGGATAGATGGGATGATGCTATGAAAATGAGAGAGTTGATGGAGGATAGTGATGTGCAGAAGCCATCTGGGAGTAGTTCTATTGAAGTGGATGGCATGGTGTCAAATTACTCTCAAGAACCTGGTCTTCTCCAAGTTGAAACAAGGAATGATTTTACAGTATGTAAAAGTGCAGATATCCCTAAATCAATGCATGGCAGTTATAGGAAAATCAATATATGA 1464 0.4133 MGIGSEKQPWVNGFRIHETKLVKVHESNQRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYSQEPGLLQVETRNDFTVCKSADIPKSMHGSYRKINI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Vvi16g0780 487 Pfam E motif 381 443 IPR046848 -
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 31 65 IPR002885 -
Vvi16g0780 487 Gene3D Tetratricopeptide repeat domain 10 96 IPR011990 GO:0005515
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat 238 263 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat 339 362 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat 106 133 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat 266 296 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat 306 328 IPR002885 -
Vvi16g0780 487 Gene3D Tetratricopeptide repeat domain 331 463 IPR011990 GO:0005515
Vvi16g0780 487 Gene3D Tetratricopeptide repeat domain 215 330 IPR011990 GO:0005515
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 162 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat family 31 77 IPR002885 -
Vvi16g0780 487 Pfam PPR repeat family 162 210 IPR002885 -
Vvi16g0780 487 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 147 451 IPR046960 GO:0003723|GO:0009451
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vvi16g0780 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Vvi16g0780 487 FunFam Os02g0167200 protein 25 92 - -
Vvi16g0780 487 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 237 460 - -
Vvi16g0780 487 FunFam Pentatricopeptide repeat-containing protein chloroplastic 94 233 - -
Vvi16g0780 487 NCBIfam pentatricopeptide repeat 165 198 IPR002885 -
Vvi16g0780 487 NCBIfam pentatricopeptide repeat 238 264 IPR002885 -
Vvi16g0780 487 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Vvi16g0780 487 NCBIfam pentatricopeptide repeat 33 66 IPR002885 -
Vvi16g0780 487 NCBIfam pentatricopeptide repeat 134 164 IPR002885 -
Vvi16g0780 487 Gene3D Tetratricopeptide repeat domain 105 214 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0780 Vvi-Chr16 15646177 15650465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0780 32 451 Glycoside Hydrolase AT3G49170 32.938 3.92e-79 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0780 - - vvi:100247077 921.383