Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0779 ATGTCTTTCCACAAGCCCAGATTTTCAAGGTCATCAGTAGCAGTAGCTGATGCTGCTTCGTGTTACTGTGCTGTTATTCTGGTGGCTTTAATCCTCTTGGCCTCTGTCAGAGAGTATTCTTCTCTCCCCACAGACGAGTCGGTGAAGGGGCACCAACTTCTGGCGCGGCCATGTGATGAAATCTATGTTGTTGGAGAAGGAGAAACCCTCCACACCATCAGCGACAAGTGTGGAGACCCGTATATAGTCGAGCAGAATCCACATATCCATGACCCAGATGATGTCTTTCCTGGACTTGTCATCAAAATCACTCCTTCAAAGCAGAGGAAGCTGCTGAGGTAG 342 0.4854 MSFHKPRFSRSSVAVADAASCYCAVILVALILLASVREYSSLPTDESVKGHQLLARPCDEIYVVGEGETLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIKITPSKQRKLLR* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0779 113 CDD LysM 61 103 IPR018392 -
Vvi16g0779 113 PANTHER EMBRYO SAC 1 9 109 - -
Vvi16g0779 113 Gene3D LysM domain 51 111 IPR036779 -
Vvi16g0779 113 Pfam LysM domain 62 104 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0779 Vvi-Chr16 15639556 15639897 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0779 - - vvi:100255607 206.453