Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0771 ATGTACTTCCTGAAATTGAGACTTCTGAATTCCATTCATAGATGCAAAACTATCAGGTCCCTGAAGCAAATCCATGCACATTTAATAGCTTCAGGTCTCCTCCATGACGAATTTGTACTCAGCAAAGTATCCGAGTTCTTCGGAAAACATATTGGGTTTGTTGACTATGCTTTTGATTTTTTGAATCAAACTGATCTCCATGTGGGCACATTACCATATAACACCTTGATAGCTGCCTATGCTAGCAGTTGTACTCCCAAAGCGGCATTTTTGGTCTATGGAAGGATAGTGGGAAATGGGTTTGTGCCAGATATGTATACTTTTCCAGTGGTGCTGAAAGCTTGTACCAAGTTTCTGGGTGTTCAAGAGGGTGAACAGGTTCATGGGGTGGCGGTAAAGATGGGTTTTTTGTGTGATCTTTACGTACAAAACTCGCTCCTGCATTTTTATAGTGTTTGTGGCAAATGGGGTGGCGCTGGTAGAGTGTTTGATGAAATGCTTGTGAGAGATGTTGTGTCTTGGACTGGCTTGATATCGGGGTATGTGAGGACTGGGTTGTTTGATGAGGCTATAAATTTGTTTTTGAAGATGGATGTGGTGCCAAATGTGGCGACTTTTGTTAGTGTGCTTGTGGCTTGTGGAAGAATGGGGTATTTGAGTATGGGGAAGGGGGTTCATGGTTTAGTTTATAAGCGTGCATTTGGGATAGGTTTAGTGGTGGGCAATGCTCTTGTGGATATGTATGTGAAGTGTGAGTGCTTGTGTGAGGCCAGGAAGCTTTTTGATGAGCTTCCTGACAGAGATATTGTTTCTTGGACTAGTATCATAAGTGGGTTGGTGCAATGCAAGCAACCAAAGGATTCATTGGAGTTGTTTTATGACATGCAAATTTCAGGTGTGGAACCAGACAGGATTATCCTTACTAGTGTTCTCTCAGCCTGTGCAAGCCTTGGGGCTCTTGATTATGGCAGATGGGTCCAGGAGTACATTGAACGCCAGGGAATTGAATGGGATATTCATATTGGAACTGCCTTGGTTGACATGTATGCAAAGTGTGGTTGTATAGAAATGGCATTGCACATATTTAATGGAATACCTAACAGGAATATTTTCACATGGAATGCATTACTAGGCGGTTTAGCAATGCATGGACATGGTCATGAGGCTCTCAAACATTTTGAGCTAATGATTGGAGCCGGGATAAGGCCCAATGAGGTGACCTTTCTAGCCATTTTGACAGCTTGCTGCCATTCTGGTTTAGTTGCTGAAGGGCGCAGTTACTTTTATCAGATGATAAGTCAGCCCTTTAATTTTTCTCCGAGATTAGAACATTATGGATGCATGATTGATCTGCTGTGTAGAGCTGGACTTCTAGATGAAGCTTATAAGTTCATTAGGAATATGCCGCTGCCGCCTGATGTGCTCATATGGGGAGCTCTTCTTAGTGCTTGCAAGGCAAATGGAAATGTTGAACTCTCCCAAGAAATTTTGAGCCATCTCCTTGAGCTTAAGTCACAAGATAGTGGGGTTTATGTTCTTCTGTCCAACATATATGCTACTAATGAAAGGTGGGATGATGTAACAAGGGTAAGGAGATTGATGAAGGACAAAGGGATAAGAAAGTTCCCTGGGTCAAGTGTTATAGAGGTGGATGGTGAGGCTCATGAGTTTCTAGTTGGAGATACTAACCACTCTCGAAATGAGGACATTCATATACTGTTAAATATTCTTGCTAATCAATGGAGGATTTGGGCTCCTCTTCATTCAGTTAAGATAATTAATGTCGATGCTGATACACAAGCCAGAGAAGAAAAGGTGACTTTATTCTTGCAGAAGAAAATGTCCAAAATTGCATAG 1857 0.4195 MYFLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQWRIWAPLHSVKIINVDADTQAREEKVTLFLQKKMSKIA* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0771 618 Gene3D Tetratricopeptide repeat domain 115 232 IPR011990 GO:0005515
Vvi16g0771 618 Gene3D Tetratricopeptide repeat domain 343 561 IPR011990 GO:0005515
Vvi16g0771 618 Gene3D Tetratricopeptide repeat domain 6 114 IPR011990 GO:0005515
Vvi16g0771 618 Pfam PPR repeat 444 468 IPR002885 -
Vvi16g0771 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi16g0771 618 FunFam Pentatricopeptide repeat-containing protein At4g38010 230 320 - -
Vvi16g0771 618 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 70 228 - -
Vvi16g0771 618 Pfam E motif 489 549 IPR046848 -
Vvi16g0771 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Vvi16g0771 618 NCBIfam pentatricopeptide repeat 371 405 IPR002885 -
Vvi16g0771 618 NCBIfam pentatricopeptide repeat 445 468 IPR002885 -
Vvi16g0771 618 NCBIfam pentatricopeptide repeat 172 197 IPR002885 -
Vvi16g0771 618 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Vvi16g0771 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vvi16g0771 618 FunFam Pentatricopeptide repeat-containing protein 341 557 - -
Vvi16g0771 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 580 IPR046960 GO:0003723|GO:0009451
Vvi16g0771 618 Gene3D Tetratricopeptide repeat domain 233 322 IPR011990 GO:0005515
Vvi16g0771 618 Pfam PPR repeat family 268 315 IPR002885 -
Vvi16g0771 618 Pfam PPR repeat family 368 417 IPR002885 -
Vvi16g0771 618 Pfam PPR repeat 172 197 IPR002885 -
Vvi16g0771 618 Pfam PPR repeat 144 170 IPR002885 -
Vvi16g0771 618 Pfam PPR repeat 73 101 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0771 Vvi-Chr16 15604719 15610731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0771 86 580 Glycoside Hydrolase AT3G49170 35.785 9.64e-107 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0771 - - vvi:100265770 1175.23