Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0768 ATGGCTTCGAGTCCGAAGAACGTTGGAATTCTCGCTATGGAGATCTATTTTCCCCGAACTTGTGTTCAGCAGGAAGCTTTGGAGGCTCATGATGGTGCCAGCAAAGGAAAATACACTATTGGGCTTGGACAAGATTGCACGGCATTTTGTACAGAGGTGGAAGATGTCATCTCTATGAGTTTGACTGCTGTTGCTTCCCTCCTTGAGAAATATGAGATTGATCCAAAGCAAATTGGACGGCTGGAAGTTGGCAGTGAAACTGTGATAGACAAAAGCAAGTCCATTAAGACCTTCCTAATGCAAATTTTTGAGGAATCTGGTAATACTGACATTGAAGGAGTGGATTCAACAAATGCATGCTATGGTGGGACTGCAGCTTTATTCAATTGTATAAATTGGGTGGAGAGTAGTTCATGGGATGGGCGTCATGGACTTGTTGTGTGCACCGACAATGCTGTCTATGCAGAAGGTCCAGCCCGACCAACTGGAGGAGCAGCTGCCATTGCCATGCTAGTAGGACCTGGTGCACCTATTGCTTTTGAAAGCAAATTTAAAGGCAGTCATATGTCTCATGCCTATGACTTCTACAAGCCCAATCTTGCGAGTGAATACCCTGTAATGCTTCTTCACATTTTCTTTTGTGTCAAAACATTATGGTGCTACATCTACGTTATCTCTTGTAGAGAAATAAGCAAACTTCATAATATGAGAAATCTTGAAACTCAATTACTTTTGTGTGTGTTTGTGTTTGTGGAATTTATCTGGTGTACACTTGTCAGGTTTACCGTTTACTGCTTTTGTCTGATCAGCCTTGTTGATGAGGCCGCAAGAGAAAAGCTAGCTCCATTTTCAGCCCTATCTAAGGATGAGAGCTACCAGAGCCGGGATCTTGAAACAGCAACACAGCAGGAAGCAAAGCATCTATATGATGCAAAGGTGCAACCAACAACTTTGTTACCAAAACAAGTTGGCAACATGTACACTGCATCTCTTTATGCGGCATTTGCATCCCTTCTTCACAATAAGAATGATTCACTGGCAGGTAAGCGGGTAATAATGTTTTCTTATGGGAGTGGTCTAACTGCCACAATGTTCTCATTCCAACTTCAGAATGGTCAACATCCATTCAGTTTGTTGAACATTGCAATGGTGATGAATGTCTCTGAGAAGTTGAAATCAAGACTTGAGTTTCCTCCTGAAAAATTTGTCAAAACATTGAAGCTAATGGAGCATCGCTATGGTGCCAAGGCCTTTGTGATGAGCAAGGACTGTAGCTTGCTGGCTTCAGGCACCTATTATCTTACTGAAGTTGACTCTATGTACCGGAGATTCTATGCCAAGAAGCCTGGGGATGGCGACAACACTGATCCTATGTCTACATGTTAG 1386 0.4271 MASSPKNVGILAMEIYFPRTCVQQEALEAHDGASKGKYTIGLGQDCTAFCTEVEDVISMSLTAVASLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEESGNTDIEGVDSTNACYGGTAALFNCINWVESSSWDGRHGLVVCTDNAVYAEGPARPTGGAAAIAMLVGPGAPIAFESKFKGSHMSHAYDFYKPNLASEYPVMLLHIFFCVKTLWCYIYVISCREISKLHNMRNLETQLLLCVFVFVEFIWCTLVRFTVYCFCLISLVDEAAREKLAPFSALSKDESYQSRDLETATQQEAKHLYDAKVQPTTLLPKQVGNMYTASLYAAFASLLHNKNDSLAGKRVIMFSYGSGLTATMFSFQLQNGQHPFSLLNIAMVMNVSEKLKSRLEFPPEKFVKTLKLMEHRYGAKAFVMSKDCSLLASGTYYLTEVDSMYRRFYAKKPGDGDNTDPMSTC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0768 461 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 108 123 IPR000590 GO:0004421|GO:0008299
Vvi16g0768 461 NCBIfam hydroxymethylglutaryl-CoA synthase 5 448 IPR010122 GO:0004421|GO:0008299
Vvi16g0768 461 Gene3D - 254 449 IPR016039 GO:0016746
Vvi16g0768 461 Gene3D - 2 229 IPR016039 GO:0016746
Vvi16g0768 461 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 178 448 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi16g0768 461 SUPERFAMILY Thiolase-like 7 175 IPR016039 GO:0016746
Vvi16g0768 461 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 3 449 - -
Vvi16g0768 461 CDD init_cond_enzymes 7 367 - -
Vvi16g0768 461 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 206 - -
Vvi16g0768 461 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 177 IPR013528 -
Vvi16g0768 461 SUPERFAMILY Thiolase-like 178 446 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0768 Vvi-Chr16 15476652 15482836 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0768 K01641 - vvi:100257525 816.609