Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0763 ATGCAAATTTTTGAGGAATCTGGTAATACTGACATTGAAGGAGTGGATTCAACAAATGCATGCTATGGTGGGACTGCAGCTTTATTCAATTGTATAAATTGGGTGGAGAGTAGTTCATGGGATGGGCGTCATGAACTTGTTGTGTGCACCGACAATGCTGTCTATGCAGAAGGTCCAGCCCGACCAACTGGAGGAGCAGCTGCCATTGCCATGCTAGTAGGACCTGGTGCACCTATTGCTTTTGAAAGCAAATTTAAAGGCAGTCATATGTCTCATGCCTATGACTTCTACAAGCCCAATCTTGCGAGTGAATACCCTGTAATGCTTCTTCACATTTTCTGTCATTTTTTTTGA 354 0.4322 MQIFEESGNTDIEGVDSTNACYGGTAALFNCINWVESSSWDGRHELVVCTDNAVYAEGPARPTGGAAAIAMLVGPGAPIAFESKFKGSHMSHAYDFYKPNLASEYPVMLLHIFCHFF* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0763 117 CDD init_cond_enzymes 1 108 - -
Vvi16g0763 117 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 1 78 IPR013528 -
Vvi16g0763 117 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 107 - -
Vvi16g0763 117 Gene3D - 1 112 IPR016039 GO:0016746
Vvi16g0763 117 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 79 108 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi16g0763 117 SUPERFAMILY Thiolase-like 7 76 IPR016039 GO:0016746
Vvi16g0763 117 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 9 24 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0763 Vvi-Chr16 15417191 15418684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0763 K01641 - vvi:100257525 246.514