Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0734 ATGCCTCTTTCTCCAATCGCCACTTCGCTTCTCTTTCTCTTCTCTCTCGCAAGTTCCCTATCAGGAGACTCTCCGTTAAAGCCTCTTCTTCTGCGCCTTCCACCTCCACTGCCAACTCTCAGACCATCAAGATCATATCGATGCCCACAAAGCCGATTGAAGGCCAAAAGACTGGAACCAGCGGTCTACGAAAGAAGGTGTCTTTTTGTTTCTATTGAATTTGCTGAAAACCTGGATGAAAAGAAAATTGTTAAAGTTTTTATAGAAGAAAATTACCTTGCGAATTGGATTCAGGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAGATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAAGGAAGGCATCATGTCAACTCCAGCTGTTTCTGCTGTAATCCGGAAGCAAAAGGCCAATGGAGGTTTTATAATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGCATCAAGTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCGATCTCTGAAATTAAGATGGTAGACATCCCAGACATTGATCTTTCTTGTCTTGGAGTCACAACATATGGGAATTTCAGTGTTGAAGTTGTAGATCCAGTTTCTGATTATTTGGAGCTACTGGAGAATGTATTTGACTTCCAGCTCATTAAAGGTCTTCTTTCGCGGTCAGATTTCAGGTTTACGTTTGATGCCATGCATGCAGTTACAGGCGCCTATGCAAAACCCATCTTTGTGGACAAGCTAGGAGCCAGTCCAGATTCAATTTCAAATGGAGTACCTCTGGAAGATTTTGGGCATGGTCATCCAGATCCTAATCTTACGTATGCTAAGGATTTGGTGAATATTATGTATGGTGTTAATGGACCTGATTTTGGAGCCGCAAGTGATGGAGATGGTGATAGAAACATGATTCTAGGAAGGAGTTTTTTTGTTACACCTTCAGACTCCGTTGCTATTATTGCTGCAAATGCTCAAGAAGCCATTCCATATTTTCAGAGTGGCCCCAAGGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAGGTCCCCACTGGATGGAAATTTTTTGGGAACCTTATGGATGCTGGAAAGTTGTCTATTTGTGGGGAAGAAAGTTTTGGAACAGGTTCTGATCACATTCGTGAGAAGGATGGCATATGGGCTGTTCTAGCTTGGCTTTCAATCATTGCATATAGAAACAAGGACAAGAAACCTGGAGAGAAATTGGCATCTGTTGCTGATGTCGTAAAGGAGCACTGGGCAACATATGGAAGGAACTTCTTTTCTAGATATGACTATGAAGAATGTGAATCTGAAGGTGCCAATAAAATGATAGAATATCTTAGAGATTTGGTCTCTAAGAGCAAGGCAGGTGAAAAGTATGGAAATTATGCACTTCAATTTGCGGATGACTTCTCATACACTGATCCTGTGGATGGAAGTGTGGCATCAAAGCAAGGTGTTCGATTTGTTTTTACGGATGGATCAAGGATCATATATCGTTTATCAGGAACCGGTTCTGCAGGTGCAACTGTTAGAATTTATATTGAACAGTTTGAGCCAGATGTCTCTAAACATGAAATGGATGCCCAAGCAGCATTGAAGCCATTGATAGATTTGGCGTTATCTTTGTCGAAGCTCAAGGACTTCACAGGAAGGGAGAAACCTACAGTGATCACATAA 1851 0.4219 MPLSPIATSLLFLFSLASSLSGDSPLKPLLLRLPPPLPTLRPSRSYRCPQSRLKAKRLEPAVYERRCLFVSIEFAENLDEKKIVKVFIEENYLANWIQALFNSLPPEDYKDGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGIMSTPAVSAVIRKQKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPETITDKIYGNTLSISEIKMVDIPDIDLSCLGVTTYGNFSVEVVDPVSDYLELLENVFDFQLIKGLLSRSDFRFTFDAMHAVTGAYAKPIFVDKLGASPDSISNGVPLEDFGHGHPDPNLTYAKDLVNIMYGVNGPDFGAASDGDGDRNMILGRSFFVTPSDSVAIIAANAQEAIPYFQSGPKGLARSMPTSGALDRVAEKLTLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLASVADVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDLVSKSKAGEKYGNYALQFADDFSYTDPVDGSVASKQGVRFVFTDGSRIIYRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQAALKPLIDLALSLSKLKDFTGREKPTVIT* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0734 616 Gene3D - 482 616 - -
Vvi16g0734 616 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 82 212 IPR005844 GO:0005975|GO:0016868
Vvi16g0734 616 FunFam Phosphoglucomutase 5 79 249 - -
Vvi16g0734 616 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 356 479 IPR005846 GO:0005975|GO:0016868
Vvi16g0734 616 FunFam Phosphoglucomutase, cytoplasmic 1 353 451 - -
Vvi16g0734 616 FunFam Phosphoglucomutase 5 250 352 - -
Vvi16g0734 616 SUPERFAMILY Phosphoglucomutase, first 3 domains 82 274 IPR016055 GO:0005975|GO:0016868
Vvi16g0734 616 Gene3D - 354 481 - -
Vvi16g0734 616 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 539 590 IPR005843 GO:0016868|GO:0071704
Vvi16g0734 616 FunFam Phosphoglucomutase 5 462 616 - -
Vvi16g0734 616 PRINTS Phosphoglucomutase/phosphomannomutase family signature 303 316 IPR005841 GO:0005975|GO:0016868
Vvi16g0734 616 PRINTS Phosphoglucomutase/phosphomannomutase family signature 167 181 IPR005841 GO:0005975|GO:0016868
Vvi16g0734 616 PRINTS Phosphoglucomutase/phosphomannomutase family signature 332 347 IPR005841 GO:0005975|GO:0016868
Vvi16g0734 616 PRINTS Phosphoglucomutase/phosphomannomutase family signature 267 286 IPR005841 GO:0005975|GO:0016868
Vvi16g0734 616 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 245 348 IPR005845 GO:0005975
Vvi16g0734 616 SUPERFAMILY Phosphoglucomutase, C-terminal domain 481 616 IPR036900 GO:0016868|GO:0071704
Vvi16g0734 616 SUPERFAMILY Phosphoglucomutase, first 3 domains 244 353 IPR016055 GO:0005975|GO:0016868
Vvi16g0734 616 Gene3D - 93 254 - -
Vvi16g0734 616 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 168 177 IPR016066 GO:0000287
Vvi16g0734 616 Gene3D - 255 353 - -
Vvi16g0734 616 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 81 616 IPR045244 GO:0004614|GO:0005975
Vvi16g0734 616 SUPERFAMILY Phosphoglucomutase, first 3 domains 340 486 IPR016055 GO:0005975|GO:0016868
Vvi16g0734 616 CDD PGM1 81 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0734 Vvi-Chr16 14878277 14896322 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0734 K01835 - vvi:100247590 1075.08