Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0725 ATGCTACAAATATTGGATCTCTCAAGGAATAATATATCAGGTGCTAGACCAAGATACTTCAACAATTTCACGGCTATGACTCAAAAAGGACCACCAGTCACTGTATATGACTACTCTGCTACAACAAAACCATCAAGCAGAGGATACGAAAGCCTTGGCATCTATTTTGATAGTACGTCATTATTTTGGAAAGGAGGAGAAGCTGAGGACAAGAACATTCTTGGACAAATGAGGAGCATTGATCTGTCAAGCAACAGAGTACTAAATGGAGAGATACCTGAAGAAATAACCGAGCTTTTGGAATTGGTATCATTGAACTTATCAAGAAACAATTTAACTGGAGTAATCACTCCCACGTTTGGTCAACTAAAATCTCTAGATGTTCTTCATTTGTCTAGAAACCAACTTTTTGGTCAAATTCCCACTAATCTTTCTCAAATATATCGTTTGAGTTTCTTAGACCTATCAAAAACTAACCTGTCAAGTAAGATTCCATCCGGGACTCAGCTCCAAAGCTTTAATGCCTCCGCATGCATGGGGAATCCTCAACTCTGTGGTTATCCGCTTTTGAAAGAATGTTCAAGAGATGACGAAGAGCAATACCCCCCCTCCTCTGATAGCAACGGAGACATCATTCACTGTGATGAGGATGGCCCATGCTTTTATGCTAGTATAGCACTTGGATTCATCACTGGATTTTGGGGAGTTTGTGGTGATGCTCAGCAATACATGGAGATATTCCTATTTTCAATTCTTCATCAAACTAAAAGATTGGCTCTATGTGACAATATCAGTGAATACTGCCAGATTGCAGAGGAGTCTTCAAAGATAAATGGTAACAGATCTCTCTTTATCACAGAGTTACCATACTTGTCCTGTTGGTATTCTGCTGCTTTCTATTGCTTTCCTATTACTATTATCTCTGTCTTAATTCTTTTCAGGTAA 945 0.3884 MLQILDLSRNNISGARPRYFNNFTAMTQKGPPVTVYDYSATTKPSSRGYESLGIYFDSTSLFWKGGEAEDKNILGQMRSIDLSSNRVLNGEIPEEITELLELVSLNLSRNNLTGVITPTFGQLKSLDVLHLSRNQLFGQIPTNLSQIYRLSFLDLSKTNLSSKIPSGTQLQSFNASACMGNPQLCGYPLLKECSRDDEEQYPPSSDSNGDIIHCDEDGPCFYASIALGFITGFWGVCGDAQQYMEIFLFSILHQTKRLALCDNISEYCQIAEESSKINGNRSLFITELPYLSCWYSAAFYCFPITIISVLILFR* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0725 314 Gene3D Ribonuclease Inhibitor 1 202 IPR032675 -
Vvi16g0725 314 Pfam Leucine Rich Repeat 2 23 IPR001611 GO:0005515
Vvi16g0725 314 PANTHER OS10G0469600 PROTEIN 2 254 - -
Vvi16g0725 314 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vvi16g0725 314 SUPERFAMILY L domain-like 2 190 - -
Vvi16g0725 314 PRINTS Leucine-rich repeat signature 2 15 - -
Vvi16g0725 314 PRINTS Leucine-rich repeat signature 123 136 - -
Vvi16g0725 314 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 70 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0725 Vvi-Chr16 14719551 14720495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0725 2 197 Receptor kinase-like Gene Family AT2G32660 37.500 1.65e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0725 - K13466 vvi:100256083 255.373