Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0722 ATGGAGCCTCTTTCAAAGCTCAGTCATGACCCTCATCCCAAGGCTATCACCACCACCACCACCTTCCATTCCGGTCTCTTCTCAAAGCTTCTGCACTCAACCCTTTGGGAACTTGTAAGGTTTTCTGTTCTTCTTCTTGTGACCTCCATTCAAGTTCTTTCCCTTCTACATGGATGGAACCCCATCTTCCACCTCCTCTCCCTCACTTGTTTCTTTCTGGTCTTCATTTTGAAGCCTCTCCTCTCAAAGCCCCATGTCTACCTTGTAGACTTCTCATGTCTCAAACCACCAAACTTTTGCAGAGTTCCCTTCTCATCTTTCCTTGAACATACCTCCATGATCGGATCCTTTGACAGAGAAAGCATAGATTTCATGGCCAAAATCCTCGCTTCTTCAGGACTAGGTGAACAGACCTATCTCCCTCCAGCTTTACATTACATTCCACCCATGACCGATCTCCAAGAATCCATCAAGGAAGTCCACATGGTACTGTTCCATGTAATGGAAGACCTTCTGTCCAAGACTAAACTATCTCCTCGAGATATTGATATACTTATCATAAACTGTAGTGGTTTTTGCCCATCTCCTTCCCTCTCCTCCATTATCATCAACAAATACTCCATGAGAAATGATATTAAAAGCTTTAATCTTTCTGGTATGGGGTGCAGTGCTGGAATCCTTGGCGTCCATTTGGCTCAAAATCTATTGAAAGTTCACAAAAATACTTACGCCGTTGTTCTTAGCACAGAGATCTTATCGACTGGTTGGTACCCTGGTAACGAGAGGCCAAAGTTGCTCCTCAATTGTCTCTTTCGAACGGGCAGTGCAGCAATCTTGCTTACAAATAAAGAAGAAGCGAAAAAAACATCCAAGTATAGGCTTCTTCACACGCTGAGAATACAGAGAGCATTTGACGACAAGGCTTATCGCTCAGCGATTCGCGAAGAGGACTCAAATGGAATCACTGGGTTTACACTCAGCCGCGACATATTACAAGCAGCCGGAGAAACTCTTCGGTCAAATATAACTATTCTTGGCTCGTCCATGTTGCCATTCTTGGAGAAATTCAGGCATGGAGTATCCATATTCCGGAAGAGATTCATTCACAAATCTGCAGAAGTTTACGTGCCGGAATTTAGGACAGTGATACAGCATTTTGTTCTTCCAACTTCAGGGAGATCAGTGATAAAAGAGATAGGAAAAGGGTTGAAGCTCGGCGAGGGAGAGATGGAGGCTGCTCTGATGACATTGCAGAGGTTTGGAAACCAATCTTCGTCTTCATTGTGGTATGAATTAGCTTACATGGAGGCTAAGGAGAGAGTGAAGAAGGGTGACAAGGTGTGGCAGCTTGGCATGGGAAGTGGGCCCAAGTGCGGTACTGTGGTCTGGGAGTGCATTAGGTCCATGGTCGGGGAGTCCACTAAGGGCCCATGGGCCGATTGTATAGATAAGTATCCAATCTTAGCCGTCCATCAAGACAATTGA 1485 0.4512 MEPLSKLSHDPHPKAITTTTTFHSGLFSKLLHSTLWELVRFSVLLLVTSIQVLSLLHGWNPIFHLLSLTCFFLVFILKPLLSKPHVYLVDFSCLKPPNFCRVPFSSFLEHTSMIGSFDRESIDFMAKILASSGLGEQTYLPPALHYIPPMTDLQESIKEVHMVLFHVMEDLLSKTKLSPRDIDILIINCSGFCPSPSLSSIIINKYSMRNDIKSFNLSGMGCSAGILGVHLAQNLLKVHKNTYAVVLSTEILSTGWYPGNERPKLLLNCLFRTGSAAILLTNKEEAKKTSKYRLLHTLRIQRAFDDKAYRSAIREEDSNGITGFTLSRDILQAAGETLRSNITILGSSMLPFLEKFRHGVSIFRKRFIHKSAEVYVPEFRTVIQHFVLPTSGRSVIKEIGKGLKLGEGEMEAALMTLQRFGNQSSSSLWYELAYMEAKERVKKGDKVWQLGMGSGPKCGTVVWECIRSMVGESTKGPWADCIDKYPILAVHQDN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0722 494 SUPERFAMILY Thiolase-like 73 286 IPR016039 GO:0016746
Vvi16g0722 494 PANTHER 3-KETOACYL-COA SYNTHASE 65 487 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi16g0722 494 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 383 464 IPR013747 -
Vvi16g0722 494 Pfam FAE1/Type III polyketide synthase-like protein 85 366 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi16g0722 494 CDD CHS_like 85 463 - -
Vvi16g0722 494 SUPERFAMILY Thiolase-like 295 465 IPR016039 GO:0016746
Vvi16g0722 494 PIRSF Very_long_ch_3-ktacl-CoA_syn 15 494 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi16g0722 494 Gene3D - 133 465 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0722 Vvi-Chr16 14671328 14672812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0722 44 488 Miscellaneous Gene Families AT1G25450 48.107 9.93e-157 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0722 K15397 - vvi:100258334 977.622