Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0721 ATGGCTAAGTCACTGTATTTTTTATGCATAATTGCACTGGTACAACTCTTAGAATTCATCCCTTCTTGCATGACCCAATTTGCGACTACCCCACCTTTGCCGGTTCTTCCAATTCCCACAGCATCTCAGTTGAAATGGCAACAGAGAGAAATCATAATGTTCTTCCACTTCGGCATGAACACGTTCACAGATTCAGAGTGGGGGACTGGGCAAGAGAACCCCAATCTATTCAACCCCACTGGGCTTGATGCTAGACAGTGGGTCAGCACAGCAGCTGAGGCTGGATTTTCGCTGGTGATTCTCACTGCAAAGCATCATGATGGCTTCTGCTTGTGGCCTTCTAAGTACACTGATCATTCAGTCGTGAGTAGTCCATGGAAAAACGGCCATGGAGATGTGGTTAGAGATCTTACCAATGCAGCCAAGGCTCAAGGCAACATCGATGTTGGCCTGTATCTCTCGCCATGGGACCGACATGATCAAAGATATGGGAAAAACCAGGAGTACAATGAGTATTACTTAGCTCAACTGCAAGAGCTTCTTAAGCAATATGGGGTCATACAAGAGATTTGGTTCGATGGAGCAAAGGGTGAGGATGCAGCAAATATGTCATACTACTTTGAAGAATGGTTTGAAATGGTGAAGGAGTTGCAGAGTTCCATTAATATATTTTCCGATGCTGGCCCTGATGTCCGCTGGGTTGGGAATGAGAATGGATTTTCAGGGAACACTTCATGGTCTACCATCAATCGGACATTGCTCTCAATCGGGAATGGAGATAATGTTGGCTACCTCAACACTGGAGATCCTCAAGGGACGGATTGGGTGCCACCAGAATGTGATGTTTCAATCCGGCCGGGATGGTTCTGGCATGCATCCGAACAACCAAAGGAGCTTAGCCAACTCCTTGAAATATACTATAACTCGGTTGGCAGAAACTGTGTGCTGCTATTCAATGTGCCACCCAATTCAACTGGACTTATATCCGAAATTGATGTTCAAAGATTGATGGAATTCAAGAAGGCCATCGATACAACATTTTCAACCAATTTAGCTGAGAAAAGCTCGGTAGATGCTAGTAGCCAAAGAGGAGGTCAGAATGGTGGCTTTGGCCCTGAAAATGTGCTAGACGACGACAATTTATGGACATACTGGGCTCCAGACGAGGGAGCAGCAGGCCAGCATTGGATTGAAATCAAGGCGGCGAGTGGAGGGCTGAGGTTTAATGTGATAAGGATTCAAGAACCGATCGGGCTAGGTCAGAGGATCATAGGGCATGAGGTTTATGCAGATGGGAAGCTGATTGTGGAAGGGACGACAGTGGGACACAAGAGGCTTCACAGGCTTGGAGATGTGGTTGAGGCTACTGTTGTGAAGGTCCAGATCTTGGAGTCTAAGGGAGTGCCTTTGGTATCCTCCTTTGGCCTGCATTTTGATCCTTTTGGGCAGCCAAATGGGACTTCAGTTTACAAAGAGTTAGAATTAGTCATAACCCCACCATTGCCTATTCTACCTCTTCCCAAGTCATCCCAGTTGAAATGGCAGGAGAGGGAACTCATAATGTTCCTCCACTTCGGTGTCAACACTTTCACTGATTCTGAGTGGGGCACTGGCCATGAAAGCCCTGCTATTTTCAACCCAACTGGGCTCAATGCTAGTCAGTGGGTCGAAGTTGCAGTAGAGGCAGGAATTTCCCTCATGATTCTCACTGCAAAGCACCATGATGGCTTCTGCTTGTGGCCTTCTAAGTACACTGATCACTCAGTTGTAAGCAGTCCCTGGAGGAACGGCCATGGGGATGTGGTCAGAGATCTTGTCACTGCAGCTGAGGCTCGTGGCGTTGATGTCGGCCTGTATCTGTCCCCGTGGGATCGACATGACCGACGATATGGAAAGGAGAAGCAGTACAATGAATACTACTTGGCACAATTACAAGAGCTTCTCCATGAATATGGGAATGTGAGAGAGATTTGGTTCGATGGAGCAAAGGGCGCAAATGCGCCAAATATGTCGTATGACTTTGGAGACTGGTTTGCCATGGTGAGGGAATTGCAGACTTCAATTAACATATTTTCCGACGCCGGCCCTGACGTCCGGTGGGTTGGAAACGAGAAGGGATTCGCCGGGAGCACATGCTGGTCAACCATCAACCGGACATCACTGTCCATTGGAAATGCAAGCATTGTTGATTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCGAAGAAACTAAGCAAACTACTTGAGATATACTACAATTCAGTTGGGCGAAACTGTGTGCTACTATTCAATGTGCCACCCAATACAACCGGACTTATATCGGAAACCGATGTGCAGCGATTGAGAGAATTTAGAAACGCAGTTGATACAATATTTTCGACGAATTTGGTGGAGAACGGCGCCATAAAAGCTAGCAGCCGGAGGGGAGGGAAGGATAGTGATTTTGGCCCCGAGAATGTGCTAGACAGTGACCATTTATGGACTTTCTGGGCTCCAAGGGAGGAAGATGACGAGCATTGGCTTGAAATCAAGGCAGCAAATGAGGGGCTGAGGTTTAACGTGGTGAGGATTCAAGAAGCGATCGGGTTGGGGCAGAGGATCAAACGGCATGAGATTTACGCCGACGGTAAACTGGTCGGAAAAGGGACGACGGTGGGGCACAAGAGGCTTCACAGGCTGGGAGGGGTGGTTCATGCCAGGAGTCTGAAAGTAAGGATACTGGAGTCAAGGGGAGTGCCTTTGGTGTCCTCTTTTGGCCTGCATTTTGATCCCTTTTGGCATCCACCACATGGCCACTCACTTTCTAATGGAAGTAGATTTTGA 2889 0.4804 MAKSLYFLCIIALVQLLEFIPSCMTQFATTPPLPVLPIPTASQLKWQQREIIMFFHFGMNTFTDSEWGTGQENPNLFNPTGLDARQWVSTAAEAGFSLVILTAKHHDGFCLWPSKYTDHSVVSSPWKNGHGDVVRDLTNAAKAQGNIDVGLYLSPWDRHDQRYGKNQEYNEYYLAQLQELLKQYGVIQEIWFDGAKGEDAANMSYYFEEWFEMVKELQSSINIFSDAGPDVRWVGNENGFSGNTSWSTINRTLLSIGNGDNVGYLNTGDPQGTDWVPPECDVSIRPGWFWHASEQPKELSQLLEIYYNSVGRNCVLLFNVPPNSTGLISEIDVQRLMEFKKAIDTTFSTNLAEKSSVDASSQRGGQNGGFGPENVLDDDNLWTYWAPDEGAAGQHWIEIKAASGGLRFNVIRIQEPIGLGQRIIGHEVYADGKLIVEGTTVGHKRLHRLGDVVEATVVKVQILESKGVPLVSSFGLHFDPFGQPNGTSVYKELELVITPPLPILPLPKSSQLKWQERELIMFLHFGVNTFTDSEWGTGHESPAIFNPTGLNASQWVEVAVEAGISLMILTAKHHDGFCLWPSKYTDHSVVSSPWRNGHGDVVRDLVTAAEARGVDVGLYLSPWDRHDRRYGKEKQYNEYYLAQLQELLHEYGNVREIWFDGAKGANAPNMSYDFGDWFAMVRELQTSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNASIVDYINTGDPKGTDWLPPECDVSIRPGWFWHKSQKPKKLSKLLEIYYNSVGRNCVLLFNVPPNTTGLISETDVQRLREFRNAVDTIFSTNLVENGAIKASSRRGGKDSDFGPENVLDSDHLWTFWAPREEDDEHWLEIKAANEGLRFNVVRIQEAIGLGQRIKRHEIYADGKLVGKGTTVGHKRLHRLGGVVHARSLKVRILESRGVPLVSSFGLHFDPFWHPPHGHSLSNGSRF* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0721 962 FunFam Putative alpha-L-fucosidase 1 32 352 - -
Vvi16g0721 962 FunFam Alpha-L-fucosidase 1 826 943 - -
Vvi16g0721 962 Gene3D - 828 943 - -
Vvi16g0721 962 Gene3D - 360 477 - -
Vvi16g0721 962 Gene3D Glycosidases 501 819 - -
Vvi16g0721 962 Gene3D Glycosidases 33 353 - -
Vvi16g0721 962 PANTHER ALPHA-L-FUCOSIDASE 498 950 IPR000933 GO:0004560|GO:0005975
Vvi16g0721 962 SMART alpha_l_fucos 39 381 IPR000933 GO:0004560|GO:0005975
Vvi16g0721 962 SMART alpha_l_fucos 496 848 IPR000933 GO:0004560|GO:0005975
Vvi16g0721 962 SUPERFAMILY (Trans)glycosidases 34 344 IPR017853 -
Vvi16g0721 962 SUPERFAMILY (Trans)glycosidases 502 811 IPR017853 -
Vvi16g0721 962 FunFam Putative alpha-L-fucosidase 1 500 819 - -
Vvi16g0721 962 SUPERFAMILY Galactose-binding domain-like 347 468 IPR008979 -
Vvi16g0721 962 Pfam Alpha-L-fucosidase 73 339 IPR000933 GO:0004560|GO:0005975
Vvi16g0721 962 Pfam Alpha-L-fucosidase 542 805 IPR000933 GO:0004560|GO:0005975
Vvi16g0721 962 FunFam Alpha-L-fucosidase 1 359 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0721 Vvi-Chr16 14620222 14632502 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0721 K01206 - vvi:100266889 1022.31