Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0705 ATGAACCATAGCCGGTCCCGACGAAATCCGACCCGCGAACCGGATTTCCCCACCGCCAAACCTCCCTCTCCAGGCGGCAGTTCCGGCGGCGGAGCCGGCGCAGCCATGAGGCTCATAGTCCCCTTACAAGGGGTGGTCCAAGGCCGTGGCGGCCTTATTCTTGGCTCTGTCATTCCCGGTGCCCTATACTACTTCTTCCAACTCTATCTAAAACGGTGTCGTTCCGCTAAACCTAATTCGAATCCACCGTCGCCGTCGTCTTCCTCGGCGCAGCTCGCAGACCTCTCCCGGTCGTCGTCGCGGTCCAATTTGTCTAGCCGTGGATCGGTGGGCCCGGTTCGGGTCTCGGCTAGGGCCAATTCGATTGCCAAGCCAAATGCTTCGCCGTATTACATTGGGTTGGAGAGGGCTTCCGAGGATCCATACGATCGTTTCGATAATCCGGATGGTATTATGCAGCTTGGATTGTCGGAGAATAGGTTGTCGTTGGATTTGATTGAGACATGGATTTTGGAGAATTTGGAGCGCTCAATGATTGGAGGGGCTGACGGAAATTTGAATATTAGTGGAATCGCGACGTATCAGCCGTTGGATGGAATGATGGAGATGAAAATTGCTGTGGCAGGTTTCATGTCTCAGGTCATGGGAACGACTGTCTCATTTGATCCATCACGACTGGTATTAACCTCTGGTGCAACTCCTGCCATTGAGACACTCTGCTTCTGCTTGGCTGACCAAGGGAATGCATTTCTTGTTCCCACTCCATATTACCCAGGTTTTGACAGGGACATGAAATGGCGAACTGGTGTGGAGCTAATACCTGTTCACTGTCGCAGTTCTGACAACTTTGCCTTAAGTGTTACTGCTCTTGATCAAGCATTTAATCAGGCAAGAAAGCGTGGACAAAGAGTCCGTGGAATTCTCATCTCAAACCCCTCAAATCCTATTGGCAATATGCTAAACAAGGAAACCCTGTACAGTCTTCTAGACTTTGCCAGAGAGAAGAACATCCATATAATCTCTGATGAAATATTTGCCGGATCCACTTATGGAAGTGAGGAGTTTGTTAGTATGGCAGAGATTCTAGAGTCAGAAGATTTTGACAAGGACAGGGTTCATATAATATATGGGCTGTCCAAAGACCTTTCTCTTCCGGGTTTTAGAGTCGGGGTTATCTATTCCTTCAACACCAGTGTTTTGGCTGCTGCTAAAAAGTTAGCAAGATTTTCTAGTGTTTCAGCTCCAACACAGCGGATACTAATTTCAATGCTTTCAGATACAAGATTCATCCAAAGATATATTGAGACCACTAGAGAGAGGATACAGAAAATGTATGTTGCTTTTGCAGCTGGTTTGAAACAATTGGGAATTGAGTGCACCAAGAGCAGTGCTGGTTTATACTGTTGGGCTGATATGAGTGGATTAATTCGCCCTTACAATGAGAAAGGAGAGCTTGAGTTATGGGATAAGCTGTTGAAGATTGGTAAGATCAATGTAACTCCTGGGTCAGCCTGCCATTGCATAGAACCAGGATGGTTCAGGTGTTGTTTTACTATGTTAGCTGAGGAAGATATTCCTGTGGTTATCAAACGGATTCAGAGAGTTGTTGAAACTTGA 1617 0.4706 MNHSRSRRNPTREPDFPTAKPPSPGGSSGGGAGAAMRLIVPLQGVVQGRGGLILGSVIPGALYYFFQLYLKRCRSAKPNSNPPSPSSSSAQLADLSRSSSRSNLSSRGSVGPVRVSARANSIAKPNASPYYIGLERASEDPYDRFDNPDGIMQLGLSENRLSLDLIETWILENLERSMIGGADGNLNISGIATYQPLDGMMEMKIAVAGFMSQVMGTTVSFDPSRLVLTSGATPAIETLCFCLADQGNAFLVPTPYYPGFDRDMKWRTGVELIPVHCRSSDNFALSVTALDQAFNQARKRGQRVRGILISNPSNPIGNMLNKETLYSLLDFAREKNIHIISDEIFAGSTYGSEEFVSMAEILESEDFDKDRVHIIYGLSKDLSLPGFRVGVIYSFNTSVLAAAKKLARFSSVSAPTQRILISMLSDTRFIQRYIETTRERIQKMYVAFAAGLKQLGIECTKSSAGLYCWADMSGLIRPYNEKGELELWDKLLKIGKINVTPGSACHCIEPGWFRCCFTMLAEEDIPVVIKRIQRVVET* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0705 538 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 377 390 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi16g0705 538 CDD AAT_like 194 534 - -
Vvi16g0705 538 MobiDBLite consensus disorder prediction 1 32 - -
Vvi16g0705 538 Gene3D Aspartate Aminotransferase, domain 1 140 531 IPR015422 GO:0003824
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 247 268 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 301 325 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 225 245 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 337 360 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 154 180 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 371 395 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 403 426 - -
Vvi16g0705 538 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 188 204 - -
Vvi16g0705 538 Pfam Aminotransferase class I and II 153 532 IPR004839 GO:0009058|GO:0030170
Vvi16g0705 538 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 103 536 - -
Vvi16g0705 538 MobiDBLite consensus disorder prediction 77 110 - -
Vvi16g0705 538 Gene3D - 174 426 IPR015421 GO:0003824
Vvi16g0705 538 MobiDBLite consensus disorder prediction 76 111 - -
Vvi16g0705 538 SUPERFAMILY PLP-dependent transferases 129 537 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0705 Vvi-Chr16 14303183 14307067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0705 K14270 - vvi:100251582 994.571