Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0700 ATGAATGTTGCTGAGTTCAATGTGGAAGCAGCTCAGCAAGGGATTGTGTACATTGATGAAGTCGATAAGATAACTAAGAAGGCTGAGAGCTTAAACATCAGCAGAGACGTATCTGGAGAGGGCGTTCAACAGGCATTGCTGAAAATGCTTGAAGGAACTGTGAGTGCATCAATTGTTGAAAGTGGTGATCTCATCGCTTATGGCTTAATACCTGAATTTATTGGACGGTTTCCAATTTCAGTGAGTTTATCGGCTTTAAATGAGGATCCACTTGTCACGCCCCAAATTCTGGGCAATCCAGAACTTGACTTGTGA 315 0.4254 MNVAEFNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVSASIVESGDLIAYGLIPEFIGRFPISVSLSALNEDPLVTPQILGNPELDL* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0700 104 Gene3D - 57 84 IPR027417 -
Vvi16g0700 104 Pfam AAA domain (Cdc48 subfamily) 4 54 IPR003959 GO:0005524|GO:0016887
Vvi16g0700 104 Gene3D - 1 56 IPR027417 -
Vvi16g0700 104 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 2 54 - -
Vvi16g0700 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 89 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0700 Vvi-Chr16 14260709 14262625 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0700 K03544 - ini:109148766 100.908