Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0699 ATGAGCTCTCGCCGCGGCTGCGGACGTATGGGCCCGCGTTGTTCTGGTTTTGCACGAACTTGGAAGGCGAAAAGGCGTGGGTTGTGGAGGAGCATATGGTTTCGATGGGGGTGCATCCAGAGGAGCCGGAGCTGGCCGGCTGTTAAGGTGAGCGCGGAGATGGGGAGAGGAGATAAGGTGTATGCATATTTGCATAAGCTGAGAACCGCTGTGAGGAGTGTCAGTGAGTCAACTGCGGAGATTATTGAGGGTTGGTTCTGCGGTGAAGCGACTTCGGAGGTGGGCGGTGCGGATTGTTGTTTGGGTGCGATTGAAGAGGTGGCATTGAAGAACGGAGGTGGTTGGCACGGGCAAGGGTGGATCGGTAAAGGGAAGTGGGTGGTTTGTAGAGCCAAAGTTGATTCGAGTGGCCAATGTGGCTCTTGCAGGGAGCAGCTGGCTACTGTTGACATTGATAGGGCTGAGACGGAGACGTTTTCAGAGTCAGTTGCGGCCATGGCAATGGAAAGGGAAGTCCGGTCCAATTTTCGGGAGTTTCAGGATTGGCTGGACAAGCATGCTGATTATGAAGCTATTGTGGATGGAGCAAATATTGGGCTCTACCAACAGAATTTTGCCTCAGGTTGTCCAACCTAA 636 0.5362 MSSRRGCGRMGPRCSGFARTWKAKRRGLWRSIWFRWGCIQRSRSWPAVKVSAEMGRGDKVYAYLHKLRTAVRSVSESTAEIIEGWFCGEATSEVGGADCCLGAIEEVALKNGGGWHGQGWIGKGKWVVCRAKVDSSGQCGSCREQLATVDIDRAETETFSESVAAMAMEREVRSNFREFQDWLDKHADYEAIVDGANIGLYQQNFASGCPT* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0699 211 FunFam Uncharacterized protein 48 150 - -
Vvi16g0699 211 Pfam Protein-only RNase P 133 203 IPR031595 -
Vvi16g0699 211 Pfam Pentacotripeptide-repeat region of PRORP 48 92 IPR033443 -
Vvi16g0699 211 Gene3D Tetratricopeptide repeat domain 37 184 IPR011990 GO:0005515
Vvi16g0699 211 PANTHER UNCHARACTERIZED 49 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0699 Vvi-Chr16 14250124 14252140 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0699 K18213 - vvi:100263566 333.954