Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0698 ATGTTGAGGTTTGCAGTAAAGAAATATTTTGATTTGGAACCAGAAAACGCTGGAAAGTATTTTGTCTTGTCTAATGCTTATGCCACTTTTGGATTGTGGGACAATGTTGTGGAGGTTAGAGGAGCGATGAGGGAATCAAGGATGAGAAATGAGCTTGGATATAGTCGGATTGAGGTCCAAAGGGAGGTGCACTTCTTCCTTATGGGGGATAAATCCCACAAACAGACTGAGCAGATATACGAGGCTGCTTGGATTGTGGATGATACAGATGTGGATGATTCATATAGGAGTGATAATGGTGATACTGATGATGGAATGGTGCTAGTCCACATGGCATCCTTGGGTAATAACAGCGAGGTAAAGGATTACAATCTCTGTCTCAAGGTTGCTGAATTTTACAGAAGTGGATCCCATTAA 417 0.4173 MLRFAVKKYFDLEPENAGKYFVLSNAYATFGLWDNVVEVRGAMRESRMRNELGYSRIEVQREVHFFLMGDKSHKQTEQIYEAAWIVDDTDVDDSYRSDNGDTDDGMVLVHMASLGNNSEVKDYNLCLKVAEFYRSGSH* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0698 138 Pfam E motif 3 58 IPR046848 -
Vvi16g0698 138 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 93 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0698 Vvi-Chr16 14247403 14248364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0698 3 81 Glycoside Hydrolase AT3G49170 37.975 2.07e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0698 - K18213 vvi:100263566 236.884