Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0696 ATGCATCGCTCATGGGCTCGAGCGCTTTCAGCCCCAGCAAGGTGTTGTGGTTGCAGGGCCACTCCTCTAAGCAATCATGTTCCCAAATTTTACACAAGGAGAACCCCCTTTGCTGATGCAAAGGTCGCATTTGGGTCGTTATTTGATGTGTTGGGCATAAATGGAATTGGAACGGCACCTCTGAGACCCAGCTACTATGGTTTAATCACATACTTGAATTTTCCTTTTACGGTTAACTATGGATTTAGCACACTATCTAGATCAGCAGAAGAGATATTGTTGAATCCAACTCAATCTGATGATGTAATTGATAACTTAGAAGATTCAAATGTTGGTTTTGATGATGTTGCCCCTACTGATGGGCCACAAATCAAAGATGGGAACAAAAATTTGGTGGAGTTCACTAAAGTTGATGTCAACCTGCTGCCTACTGTAATTCTTGTAGGGCGCCCAAATGTAGGCAAGTCAGCACTGTTTAACCGTTTGATTAGGAGAAGGGAGGCTCTTGTGTACAACACTCCTGATGATCACGTAACTCGAGACTTCCGGGAAGGCATTGCCAAATTGGGTGATTTGCGATTTAGGGTATTGGATTCGGCTGGCTTAGAAATGGCGGCAACTTCAGGTTCTATTCTTGGCAGAACTGCAGACATGACTGCAAATGTGCTAGCAAGGTCTCAATTTGCGATCTTCCTGATAGACGTGAGAGCTGGACTTCATCCCATGGATTTGGAGGTTGGAAAGTGGTTGCGTAGACATGCACCTGGAATCTGTACTATCTTAGTGATGAATAAATCTGAATCACTTGATGATGGTGCCGGCTTGCTTGCTGCAGCTGCTGGTGAAGCTTATGAATTGGGGTTTGGGGATCCTATTGCTATATCTGCAGAGACTGGCCTTGGTATGGCAGAACTTTATGAATCTCTTAGGCCTTTGCTTGAGGACCACATGCTCCAGGTCTTAGATGATAAAGGTAGTCAGGAAAATAGCTCCTGTGACGTTGAGGAGTCTAAGTCGCCGTTACAGTTAGCGATTGTAGGGCGGCCCAATGTTGGGAAGTCAACCTTACTGAACACATTATTGCAAGAAAATCGTGTTCTGGTGGGGCCAGAAGCTGGTTTGACAAGAGATTCAGTAAGAGCTCAGTTTCAATTTCAAGGGCGTACTGTTTATCTGGTTGACACTGCAGGTTGGTTGCAAAGGACAAAGCAGGAGAAAGGACCGGCATCCTTGAGCGTAATGCAATCAAGAAAAAGTATTATGAGGGCTCATGTAGTTGCTTTGGTCCTTGATGCAGAAGAGATTGCAAATGCTAGAAGCAGTATGAAGCATGCTGAAGTAGTCATAGCTAGACGAGCAGTGGAAGAAGGGCGTGGTTTAGTTGTAATTGTGAACAAAATGGACCTTCTAAAAGGGAGAAAGAATTCTAAGTTATATGAGAAGGTCATGGAAGCGGTTCCTGAAGAAATTCAGATGGTTATACCCCAGGTTACAGGAATACCAGTTGTATTCATTTCAGCATTAGAGGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGGTTATGAGCAGGCATTCTTGGAAAGATCAGGCTGCACAACCCAAGATCAAGTACTTCACCCAGGTGAAGGCTCGGCCCCCAACTTTTGTTGCCTTTATGGGTGGGAAGACACAGCTCTCAAATACAGACCTCAGGTTCTTGACAAAGTCTTTGAAGGAAGACTTTGATTTGGGGGGTATTCCCATCCGAATCATGCAGCGGTCCATTCCAAAGAAACTAGGGGGTACTGGCAATACCAAAAGCATGTCATCTGCTGGAAGAACCTCTGAAAGGATCTCCTCTGACAAGAGAAGTGTCTTCACTTCTGAAAACGTCAATGTAATTACATAG 1956 0.4453 MHRSWARALSAPARCCGCRATPLSNHVPKFYTRRTPFADAKVAFGSLFDVLGINGIGTAPLRPSYYGLITYLNFPFTVNYGFSTLSRSAEEILLNPTQSDDVIDNLEDSNVGFDDVAPTDGPQIKDGNKNLVEFTKVDVNLLPTVILVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEMAATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMNKSESLDDGAGLLAAAAGEAYELGFGDPIAISAETGLGMAELYESLRPLLEDHMLQVLDDKGSQENSSCDVEESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAVEEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQMVIPQVTGIPVVFISALEGRGRISVMRQVIDTYEKWCLRLSTARLNRWLRKVMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFMGGKTQLSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGRTSERISSDKRSVFTSENVNVIT* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0696 651 Hamap GTPase Der [der]. 142 612 IPR016484 GO:0005525
Vvi16g0696 651 NCBIfam small GTP-binding protein domain 144 308 IPR005225 GO:0005525
Vvi16g0696 651 NCBIfam small GTP-binding protein domain 342 516 IPR005225 GO:0005525
Vvi16g0696 651 PRINTS GTP1/OBG GTP-binding protein family signature 343 363 IPR006073 GO:0005525
Vvi16g0696 651 PRINTS GTP1/OBG GTP-binding protein family signature 392 407 IPR006073 GO:0005525
Vvi16g0696 651 CDD EngA1 147 313 - -
Vvi16g0696 651 NCBIfam ribosome biogenesis GTPase Der 143 607 IPR016484 GO:0005525
Vvi16g0696 651 PANTHER GTPASE DER 127 640 - -
Vvi16g0696 651 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 530 609 IPR032859 -
Vvi16g0696 651 Gene3D - 526 610 IPR015946 -
Vvi16g0696 651 Gene3D - 335 525 IPR027417 -
Vvi16g0696 651 MobiDBLite consensus disorder prediction 613 639 - -
Vvi16g0696 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 270 IPR027417 -
Vvi16g0696 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 513 IPR027417 -
Vvi16g0696 651 CDD EngA2 339 524 - -
Vvi16g0696 651 Pfam 50S ribosome-binding GTPase 343 466 IPR006073 GO:0005525
Vvi16g0696 651 Pfam 50S ribosome-binding GTPase 145 265 IPR006073 GO:0005525
Vvi16g0696 651 Gene3D - 143 315 IPR027417 -
Vvi16g0696 651 MobiDBLite consensus disorder prediction 614 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0696 Vvi-Chr16 14232740 14241070 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0696 - - vvi:100251571 1255.74