Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0693 ATGAGTTACGCCGCCTACAAGATGATGCACTGGCCCACCGGAATCGAGAACTGCGCCTCCGGCTTCGTCACCCACAGCCGCGCCGATTTCGCGCCCCAAATCGCACCAATTCAAACCGATGATCTCGAGTCGGAGTGGCCCACCAAGCGCCAAATCGGACCCCTTCCCAACCTCATTGTCACCGCAGCCAACATTCTTGAGGTATACATGGTTAGGGTTCAAGAAGACGACAGCAGAGAATCCAGAGCCTCCGCTGAAACCAAGCGTGGTGGTGTTATGGCCGGAATTTCTGGCGCTGCCCTTGAACTCGTCTGTCAGTACAGGTTGCATGGTAATGTTGAAACAATGACGGTATTGCCTTCAGGAGGTGGTGATAATAGCAGGAGAAGAGATTCAATTATTTTAGCTTTCCAAGATGCTAAAATTTCAGTTCTAGAGTTTGATGATTCAATCCATGGGCTTCGTACAAGCTCTATGCACTGTTTTGAGGGTCCGGAGTGGTTTCATTTGAAAAGAGGTCATGAATCTTTTGCAAGAGGTCCATTGGTAAAAGTTGATCCTCAGGGCAGGTGTTCAGGCGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGCTGGTTATGGTTTGGTTGGGGATGAGGAGGCTTTGAGTTCTGGAAGTGCAGTTTCTGCTCGTGTTGAATCATCGTACGTAATCAGTCTAAGAGATTTGGACATGAAACATGTAAAAGACTTCACATTTGTACATGGTTATATTGAGCCTGTGATGGTAATTCTTCATGAGAGGGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATTTCTGCGCTTAGTATTAGTACAACTTTGAAGCAGCATCCTCTCATATGGTCTGCTGTTAATCTCCCACATGATGCTTACAAGCTTCTTCCAGTGCCTTCTCCAATTGGTGGAGTTGTTGTAATTAGTGCAAATTCTATTCATTACCATAGCCAGTCAGCATCATGTGCATTGGCTTTGAACAACTATGCTGTCTCTGCAGATAACAGCCAGGAGATGCCCAGGTCAAGTTTTAGTGTGGAGCTTGATGCTGCCAATGCAACTTGGTTATCAAATGATGTGGCTATGCTGTCAACAAAAACAGGGGAGCTACTTTTGCTGACACTGGCTTATGATGGACGGGTTGTTCACAGACTTGATCTTTCAAAGTCTAGGGCATCAGTGCTTACTTCGGGAATTGCTGCTATTGGAAACTCATTATTTTTTCTAGGCAGTCGGCTGGGAGATAGTTTGCTTGTGCAATTTACTTCCATACTGTCTTCTAGTGTGAAGGAAGAGGTTGGAGATATTGAAGGTGATGTGCCTTCAGCAAAGCGATTGCGCAAGTCCTCTTCTGATGCTTTGCAAGATATGGTCAATGGTGAGGAGCTATCGTTGTATGGTTCAGCTCCAAATAGCACAGAAACATCACAGAAGACATTTTCATTTTCAGTGAGGGATTCATTCATCAATGTTGGTCCGCTGAAAGACTTTGCCTATGGTCTTCGAATTAATGCTGACCCAAAAGCAACTGGCATTGCTAAACAAAGTAATTATGAACTGGTGTGTTGTTCTGGTCATGGAAAGAATGGTGCTCTCTGCATTCTGCAGCAATCAATTCGTCCAGAAATGATCACGGAGGTTGAACTACCTGGTTGCAAAGGAATTTGGACAGTTTATCACAAGAACACACGTGGTCATAATGCTGATTCTACCAAGATGGCTACTAAGGACGATGAGTATCATGCATACTTGATTATAAGTCTGGAATCTCGAACGATGGTGCTAGAAACAGCTGATCTTCTTGGTGAAGTTACTGAAAGTGTTGACTATTATGTGCAAGGATGTACCATTTCAGCAGGCAATTTGTTTGGAAGACGTCGAGTTGTCCAGGTCTATGCTCGGGGCGCTCGAATTCTAGATGGTGCTTTCATGACCCAAGATCTTCCAATTTCCGAGAGTTCTACGGTATTATCGGTCTCTATAGCTGATCCGTATGTATTGCTGAGAATGTCTGATGGAAATATTCAACTTCTTGTTGGAGATCCTTCTACCTGCACTGTATCTATAAATATCCCAGCTGTATTCGAAAGCTCAAAGAAATCAATATCTGCCTGTACATTGTATCATGATAAGGGACCTGAACCATGGCTACGGAAGACAAGTACTGATGCATGGCTTTCTACTGGCATTGGTGAGGCCATTGATGGGGCTGATGGTGCAGCACAAGATCAGGGCGATATATACTGTGTTGTTAGTTATGAAAGTGGTGACCTTGAAATATTTGATGTGCCTAATTTCAATTGTGTTTTCTCTGTGGATAAATTTATGTCTGGGAATGCCCACCTTGTTGATACTCTTATCCTGGAACCATCTGAAGATACTCAGAAAGTTATGAGCAAAAATTCTGAAGAAGAGGCTGACCAAGGCAGGAAAGAAAATGCCCATAACATAAAGGTCGTTGAATTGGCCATGCAAAGATGGTCAGGACAGCATAGTCGCCCTTTTCTTTTTGGAATATTGACTGATGGGACAATTCTTTGCTACCATGCTTACCTATATGAAGGTCCAGAAAGCACTCCTAAAACGGAGGAAGCCGTTTCTGCACAAAATTCCCTCAGCATAAGCAATGTAAGTGCCTCTCGACTTAGAAATTTGAGATTTGTCCGTGTCCCCTTGGACACATACACAAGGGAGGAGGCATTATCTGGAACCACAAGCCCAAGGATGACCGTTTTCAAGAACATTGGTGGTTGTCAAGGGTTATTCCTCTCTGGTTCAAGACCTCTTTGGTTCATGGTTTTCAGGGAACGAATCCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCCTTCACTGTTCTTCACAACATCAATTGCAATCATGGGCTTATTTATGTCACCTCACAGGGTTTCTTGAAAATATGCCAACTACCCGCTGTATCAAGCTATGACAACTACTGGCCAGTGCAAAAGATTCCATTGAAGGGCACTCCACATCAGGTCACTTACTTTGCGGAGAAGAATTTATATCCTCTTATAGTTTCAGTTCCTGTCCTTAAGCCACTGAATCATGTTCTTTCATCTCTTGTTGATCAAGAAGCTGGCCATCAGCTTGAGAATGATAATTTGAGCTCTGATGAACTGCACCGGAGTTATTCTGTAGATGAATTTGAGGTTCGAGTTCTAGAACCAGAAAAGTCTGGTGCTCCTTGGCAAACTAGGGCTACAATCCCAATGCAAAGTTCTGAAAATGCACTAACTGTGCGAGTCGTTACATTGTTTAATACTACCACAAAAGAAAATGAAACACTTTTGGCCATTGGGACTGCTTACGTACAAGGGGAGGATGTTGCTGCAAGGGGACGGGTGCTTTTATTTTCTGTTGGAAAAAATACTGATAACAGTCAAAATCTGGTTTCTGAGATCTACTCTAAGGAGCTGAAAGGTGCCATATCTGCCGTAGCCTCACTTCAAGGTCATTTGTTGATAGCTTCTGGACCTAAAATTATCTTACACAAGTGGACTGGTACAGAGTTGAATGGTGTTGCATTTTTCGATGCTCCACCTTTATATGTTGTGAGCCTCAACATTGTTAAGAATTTTATCCTCCTAGGTGACATTCACAGAAGCATTTACTTTCTTAGTTGGAAGGAACAGGGAGCTCAACTTAACTTATTAGCGAAAGATTTTGGCTCGCTTGATTGTTTTGCAACTGAGTTTTTGATTGATGGAAGTACACTCAGTCTCATTGTTTCAGATGATCAAAAAAACATTCAGATATTCTATTATGCACCAAAGATGTCAGAAAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAGTTTCATGTTGGTGCCCATGTGACTAAGTTCTTGCGTTTACAGATGCTTCCTGCCTCATCTGATAGAACAAGTGCTACTCAAGGATCTGATAAAACCAATCGGTTTGCTTTATTGTTTGGTACACTGGATGGTAGCATTGGTTGTATTGCACCCCTTGATGAACTCACTTTTCGTAGGCTTCAGTCACTACAGAAAAAGCTTGTTGATGCTGTTCCCCATGTTGCTGGACTCAACCCAAGATCTTTCCGCCAGTTCCGCTCAAATGGCAAGGCTCATCGACCTGGCCCTGACAACATAGTTGACTGTGAGCTGCTCTGCCAATGGCCGATCACCTAG 4230 0.4333 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTVLPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFARGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISLRDLDMKHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLPVPSPIGGVVVISANSIHYHSQSASCALALNNYAVSADNSQEMPRSSFSVELDAANATWLSNDVAMLSTKTGELLLLTLAYDGRVVHRLDLSKSRASVLTSGIAAIGNSLFFLGSRLGDSLLVQFTSILSSSVKEEVGDIEGDVPSAKRLRKSSSDALQDMVNGEELSLYGSAPNSTETSQKTFSFSVRDSFINVGPLKDFAYGLRINADPKATGIAKQSNYELVCCSGHGKNGALCILQQSIRPEMITEVELPGCKGIWTVYHKNTRGHNADSTKMATKDDEYHAYLIISLESRTMVLETADLLGEVTESVDYYVQGCTISAGNLFGRRRVVQVYARGARILDGAFMTQDLPISESSTVLSVSIADPYVLLRMSDGNIQLLVGDPSTCTVSINIPAVFESSKKSISACTLYHDKGPEPWLRKTSTDAWLSTGIGEAIDGADGAAQDQGDIYCVVSYESGDLEIFDVPNFNCVFSVDKFMSGNAHLVDTLILEPSEDTQKVMSKNSEEEADQGRKENAHNIKVVELAMQRWSGQHSRPFLFGILTDGTILCYHAYLYEGPESTPKTEEAVSAQNSLSISNVSASRLRNLRFVRVPLDTYTREEALSGTTSPRMTVFKNIGGCQGLFLSGSRPLWFMVFRERIRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGFLKICQLPAVSSYDNYWPVQKIPLKGTPHQVTYFAEKNLYPLIVSVPVLKPLNHVLSSLVDQEAGHQLENDNLSSDELHRSYSVDEFEVRVLEPEKSGAPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSVGKNTDNSQNLVSEIYSKELKGAISAVASLQGHLLIASGPKIILHKWTGTELNGVAFFDAPPLYVVSLNIVKNFILLGDIHRSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLIVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLPASSDRTSATQGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFRSNGKAHRPGPDNIVDCELLCQWPIT* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0693 1409 Gene3D - 54 448 IPR015943 GO:0005515
Vvi16g0693 1409 FunFam cleavage and polyadenylation specificity factor subunit 1 962 1349 - -
Vvi16g0693 1409 MobiDBLite consensus disorder prediction 809 828 - -
Vvi16g0693 1409 Pfam CPSF A subunit region 1074 1406 IPR004871 GO:0003676|GO:0005634
Vvi16g0693 1409 MobiDBLite consensus disorder prediction 812 828 - -
Vvi16g0693 1409 Gene3D - 962 1349 IPR015943 GO:0005515
Vvi16g0693 1409 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 7 1406 - -
Vvi16g0693 1409 FunFam Cleavage and polyadenylation specificity factor subunit 1 53 446 - -
Vvi16g0693 1409 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 177 694 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0693 Vvi-Chr16 14100069 14219500 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0693 K14401 - vvi:100256706 2764.56