Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0691 ATGTCTACTCACTCACTGTCTCTGCTCCCAATTTCATGTCATAGAAACCCTAACGATCCTGCTTCACCTCTTCTACTTTCTCTCCATAAAAACGGTTTGTTTAGCTCTTTGATTGGTCAGAAGCTTTCCATTCAGTCTTCCCATTCGCGGCTTGTTGTTTCGACGCGTTATAGATCGACCGTCGCTACGGTTTTGTTGAGCCTTCCAACTGCAAAGCCAGAGAGGACTTCTTCTGAGAAAGTTCCAAAATGGTCGGCCAGGGCAATAAAGTCATTTTCTATGGCGGAATTGGAAGCAAGGAAGCTGAAGTACCCAAATACTGGAACCGAGGCTCTTCTAATGGGAATCTTGGTTGAGGGTACTAGCCTAGCTGCAAAATTTTTGAGGGCAAATGGAATCACACTTTTCAAGGTGCGAGAAGAAACTGTGAATTTGCTTGGAAAATCTGATTTGTACTTTTTCAGCCCTGAGCATCCTCCATTGACTGAACCAGCCCAGAGAGCCCTTGATTGGGCTGTTGATGAGAAAATAAAGTCAGGTGAAGAAGGGGAAATAACCACAAGTCATCTGCTTCTTGGAATTTGGGCAGAGGAAGAATCAGCAGGTCACAAGATTTTGGCAACTCTTGGTTTTAACGATGATCAAGCTAAGGAGCTAGCTAAATCTATTAACAAGGAAACTGATTTGAGCTTCTAG 696 0.4368 MSTHSLSLLPISCHRNPNDPASPLLLSLHKNGLFSSLIGQKLSIQSSHSRLVVSTRYRSTVATVLLSLPTAKPERTSSEKVPKWSARAIKSFSMAELEARKLKYPNTGTEALLMGILVEGTSLAAKFLRANGITLFKVREETVNLLGKSDLYFFSPEHPPLTEPAQRALDWAVDEKIKSGEEGEITTSHLLLGIWAEEESAGHKILATLGFNDDQAKELAKSINKETDLSF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0691 231 SUPERFAMILY Double Clp-N motif 83 223 IPR036628 -
Vvi16g0691 231 ProSiteProfiles Clp repeat (R) domain profile. 81 226 IPR004176 -
Vvi16g0691 231 Pfam Clp amino terminal domain, pathogenicity island component 184 221 IPR004176 -
Vvi16g0691 231 Pfam Clp amino terminal domain, pathogenicity island component 95 147 IPR004176 -
Vvi16g0691 231 Gene3D - 83 230 IPR036628 -
Vvi16g0691 231 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 1 230 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0691 Vvi-Chr16 14054502 14061236 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0691 - - vvi:100261804 452.21