Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0685 ATGTTGAAGAAGGGGCTGAAGCCGCGCCGCCTCTTCTTCACACCCAAAAAAAATCTTGCAACTTGTTCTCCCGCACTAGACCCACCGCCATCTTCAGCCCCCACCACCGAACATCATAACAAACTTTGCTTTACCCTAACTGACCGCCTCATTCGCCGCGGGGTACTGTCGTTGGGTCAGCAAGTGGTTCGGAGAATGATCAAGCAGTCTCCGTCTGTTTCAGATGCAATTTTAGCCGTTGAGTTTGCCGCAGCACGAGGGTTGGAGCTTGACTCCTGTGGGTATGGTGTGCTTCTGAGGAAACTCGTGGGTTCGGGTGAACACCGTTTTGCGGAAGCGGTGTATCGTGATTATGTTATAGCAAGAGGTATCATCCCTGACTCGGAAACGTTGAATTCTATGGTGATCTGTTACTGTAATTTAGGGAAATTGGAGGAAGCCATGGCTCATTTTGATAGACTATTTGAAGTCGATTCTTTTCCTTGTAAACCTGCGTGTAATGCAATGCTTAGGGAGCTTTGCGCCCGAGAAAGAGTCTTGGAGGCGTTTGACTACTTTGTTAGAATCAATGATGTTGGAATACTTATGGGTCTTTGGTGTTTCAATAGGTTGATTGACGGGTTGTGTGACAAGGGGCACGTAGATGAAGCATTCTACATGTTTGATACAATGCGTGAAAGAACTGGGTTGCCAGCTACCATTCATTTGTACAAAACTTTATTTTATGGTCTCTGTAGACAAGAGAGGGTGGAGGAGGCCGAATTGTTTGTGGGAGAAATGGAGTCCGAGGGGCACTTTATAGATAAGATGATGTACACTTCACTCATTCATGGATACTGCAGGGGCAAGAAAATGAGAACAGCGATGCGGGTTTTTTTGAGAATGCTGAAGATGGGTTGTGACCCAGATACTTATACTTACAACACTTTGATTCATGGGTTTGTAAAACTTGGATTATTTGATAAAGGATGGATATTGCACAACCAGATGTCAGAGTGGGGACTGCAACCCAATGTTGTAACTTATCACATTATGATTAGGAGGTATTGTGAAGAAGGAAAAGTGGATTGTGCTCTCACACTTTTAAGTAGCATGAGTAGTTTCAATTTGACTCCTAGTGTCCACAGTTATACTGTCTTAATTACTGCACTTTATAAAGAGAACAGGTTAGTGGAAGTAGAAGAATTGTACAAAAAGATGCTGGACATTGGTGTTGTTCCTGATCATGTACTATTTTTTACCCTTATGCAGAAGCAACCAAAAGGGCATGAGCTTCATCTTGCTCTCAAGATATTGCAGGCAATTGCCAAGAATGGATGTAATTTGGATTTGTGTTTGCTCTCAACCTCTGCTACTCATAGTCCTACCCAGGATGTGGAGCAAGAAATTGAGTGCCTGCTTGGGGAAATTGTGAGAAGGAACTTTGCTTTAGCTGATGTAGCATTTGGTATTTTTATCAGTGCCTTATGTGCAGCAGGTAAAACTGATGCTGCTTTGCTTTTCATGGACAAAATGGTAAGTCTTGGATGCAGGCCTTTGCTTTCCACTTACAACTCCTTGATCAAGTGTCTTTTCCAGGAGAGGCTTGTTGAGGATGCCAAGTCCCTAATTGATCTAATGCAAGAGAATGGCATTGTTCCTGATCTTGCAACTTATTTAATTATGGTACATGAACACTGTAATCATGGGGACTTGGCCTCTGCATTTGGTCTTTTGGATCAGATGAATGAGAGGGGACTGAAGCCTAGTGTTGCTATTTATGATTCCATCATCGGTTGTCTAAGCAGAAGAAAAAGAATTTTGGAAGCAGAAAATGTGTTTAAGATGATGCTTGAGGCTGGTGTGGATCCTGATGCTATTATCTATGTCACAATGATCAGTGGCTACTCCAAGAATCGTAGAGCTATTGAAGCTAGGCAGTTGTTTGATAAAATGATAGAGCATGGCTTTCAGCCAAGTTCGCATTCTTATACTGCTGTTATAAGTGGATTAGTGAAGGAAAACATGATAGACAAGGGATGCTCATACCTCAGTGATATGTTGAAGGATGGATTTGTGCCAAATACAGTGCTTTACACCTCTCTAATCAATCAGTTCTTGCGGAAGGGAGAGCTTGAATTTGCCTTTAGATTAGTTGATTTGATGGATAGAAACCAGATTGAATGTGATATGATAACATGTATTGCATTGGTCAGTGGTGTTTCCAGAAATATCACCCCTGTCAGAAGAAGATGGTACCATGTAAAGAGTGGGTCTGCAAGGGTAAGAGAAATATTGCTCCATTTGCTCCATCAGAGCTTTGTTATCCCAAGGGAAAATAATCTAAGCTTTCCTCGTGGTTCTCCCCGCAAAATAAAATACTTTGCATTGAATCTGATGCAAAAAATTAAAGGCTCTAGCTTTATGCCAAATTTGTATCTCTATAATGGGATTATTTCTGGGTTTTGTCGGGCGAATATGATCCAGGATGCATATAATCATTTTGAATTGATGCAAACTGAGGGTGTATGTCCCAATCAGGTGACTTTCACTATTCTTATTAATGGGCATACCAGATTTGGTGAAATTGATCATGCAATAGGATTATTCAATAAGATGAATGCAGATGGTTTAGCTCCAGATGGAATTACATACAACGCTCTAATAAAAGGTCTTTGTAAGGCTGGGCGACTACTTGATGCATTGTCAGTGTCACATACAATGCATAAAAGGGGGCTTTTCCCTAATAAGTCTTCTTATGAGAAACTACTCAAATGTCTTTGTGCTAGTCATTTGGGAAAATATTTGGGTGTGAAGTTGGACACCAACTTACCATACATACTTCAGCATTTATGGAGCTTGGTGATATGGGGCTTTTCCTTTGGGGGGAATGGAGCTTGTGTACCTATTTTTGGTGGCTTGCCAAAGAGCTATTCTAAATCATCCTGGGCTATTTTTATTCTTTCTGCAAATGGTGCAATTTTGAATGTTAACCTTCATCAGCCTAACTCTTCTGTAGGTACTTTAACCAATGAGGGTCACTTTGAGATATTTCCTTGGTCTGGATCATGTATGCCTACTGAAAGCAGAGGACAAAGAGGAGATCTGGCGGGGATGAGCATCTCTTTGGCAGGTCCAGATGGCCGTGTTCTGGGAGGAGGACTTGGTGGTCTATTAGGGCTGATGGCCCTATTCAGGTTCTGGTGGGAAGTCTTCTGCCAGGCCACCAGCAGGAGCAAAAGCCAAACAAGCAGAGAATTGAGCCTGTACAAGCTGCTATCCCAACTACTATGA 3273 0.4207 MLKKGLKPRRLFFTPKKNLATCSPALDPPPSSAPTTEHHNKLCFTLTDRLIRRGVLSLGQQVVRRMIKQSPSVSDAILAVEFAAARGLELDSCGYGVLLRKLVGSGEHRFAEAVYRDYVIARGIIPDSETLNSMVICYCNLGKLEEAMAHFDRLFEVDSFPCKPACNAMLRELCARERVLEAFDYFVRINDVGILMGLWCFNRLIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEIECLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKSGSARVREILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNADGLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRGLFPNKSSYEKLLKCLCASHLGKYLGVKLDTNLPYILQHLWSLVIWGFSFGGNGACVPIFGGLPKSYSKSSWAIFILSANGAILNVNLHQPNSSVGTLTNEGHFEIFPWSGSCMPTESRGQRGDLAGMSISLAGPDGRVLGGGLGGLLGLMALFRFWWEVFCQATSRSKSQTSRELSLYKLLSQLL* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0685 1090 CDD DUF296 972 1043 IPR005175 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles PPC domain profile profile. 944 1086 IPR005175 -
Vvi16g0685 1090 SUPERFAMILY HCP-like 134 345 - -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 563 679 IPR011990 GO:0005515
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 281 445 IPR011990 GO:0005515
Vvi16g0685 1090 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 161 444 - -
Vvi16g0685 1090 Pfam PPR repeat 480 510 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat 130 154 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat 271 300 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat 376 405 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat 586 615 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vvi16g0685 1090 Pfam Plants and Prokaryotes Conserved (PCC) domain 975 1050 IPR005175 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 515 561 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 803 850 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 873 921 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 687 734 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 617 666 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 200 246 IPR002885 -
Vvi16g0685 1090 Pfam PPR repeat family 305 350 IPR002885 -
Vvi16g0685 1090 Gene3D - 969 1081 - -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 446 562 IPR011990 GO:0005515
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Vvi16g0685 1090 SUPERFAMILY AF0104/ALDC/Ptd012-like 976 1060 - -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 874 908 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 655 689 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 200 229 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 516 548 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 236 268 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 551 584 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 480 512 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 841 874 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 586 619 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 271 304 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 876 909 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 806 839 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 690 723 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 375 408 IPR002885 -
Vvi16g0685 1090 NCBIfam pentatricopeptide repeat 621 653 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 787 848 IPR011990 GO:0005515
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 158 280 IPR011990 GO:0005515
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 849 928 IPR011990 GO:0005515
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 680 738 IPR011990 GO:0005515
Vvi16g0685 1090 Gene3D Tetratricopeptide repeat domain 32 157 IPR011990 GO:0005515
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 839 873 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 804 838 IPR002885 -
Vvi16g0685 1090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0685 Vvi-Chr16 13978509 13986616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0685 548 925 Glycosyltransferase AT1G05670 22.597 2.86e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0685 - - vvi:100248078 1859.34