Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0668 ATGGGACCTCTTACAAGATCCATCCATGACCCTCTTCCCAAAGTTATCATCGCCATCACCTTGCTTTCCACTCTCCTCTCGAAGCATCTCCACTCTACGCTTTTGGAGCTAGCAAGAGTTTCTGCTCTTCTGCTTGTGATCTCGATTGAAGTTCTTTCCGTTATACAGAAATGGGATCCCATCTTCCAGCTCTTCTCACTCGCTTGTTTCTTTCTGTTCTTCATTGTCAAGCCTCTCCTCTCAAAGCCTCATATCTACATTGTAGACTTCTCATGTTTCAAACCACCAAACTGTTGCAGAGTTCCCTTTTCATTATTCCTTGAACATGCCTCCATGATTGAATCATTTGACAGCAAAAGCATAGGTTTCATGGCCAAACTCCTCAAATCTTCGGGACAAGGTGAACAGACTCATCTCTCTCCAGCTTTATATTACATTCCACCCATTACCCATCTCCAAGAATCTATCAAAGAAGTCCACATGATACTGTTCCCTGTAATGGAAGATCTTCTGTCCAAGACTAAACTCTCCCCTCAAGATATCGATATACTTATCGTTAACTGTACTAGTCTTTGCTCGTCTCCTTCCCTCTCCTCCATTATCATCAACAAATACTCCATGAGAGATGATATTAAGAGCTTTAATCTCTCTGGCATGGGGTGCAGTGCTGGAATTCTTGGCGTCCATTTGGCTCAAAATCTATTGAAAGTTCACAAGAATTCTTACGCCATTGTTCTTAGCACGGAGATCACATCGGCTGGGTGGTACGCTGGAAACGATAAGTCTAAGTTGCTCAGCAATTGTATCTTTCGTATGGGAGGTGCAGCAATCTTGCTTACAAATAGGGAAGAAATGAAAAAAACATCCAAGTATCGGCTGCTTCACACGGTGAGAATACAGAGAGCATTTGACGACAAGGCTTATCTTTCAACAGTTCGCGAAGAGGACTCAAATGGAGCCCTTGGGGTTACATTCAGCCACGACATAGTGCAAGTAGTTTCAGAAACTGTTCGTTCAAATATCACTGTCCTCGGCTCAGCTATCTTGCCGTTATTGGAGAAATTCAGGTATAGAGCATCCAGATTCCGGAAGAGATATATCCAAAAATCTGCAGAGGTTTACGTGCCGGATTTTAGGAGAGTGATACAGCATTTTGTTCTGCCAGCTTCAGGGAGGTCATTGATTATAGATATAGGAAAAGGGTTGAATCTTGGTGAAAGAGAGACGGAGGCTTCTCTGATGACCTTGCGAAGGTTTGGGAACCAATCTTCATCTTCTTCCTGGTATGTATTAGCTTATATGGAGGCCAAGGAGAGAGTGAAGAAAGGCGACAAAGTGTGGCAACTTGGGATGGGAAGTGGGCCTAAGTGCGTCAGTTTTGTCTGGGAGTGCATGAGGCCCATGGTTGAGGAGTCCAAGAAGGGCCCATGGGCCGATTGCATAGGATTGAGGTTGTACTCTACCATACCAATGGAACACACTTATTCTGAAGCAACTGGCAATGGAATTTGCAAACTTCTTTCTTACTTGACTTGTGAGGCTCTATGCTTGAAGCAAAATCAGACTACTTGCACAAAGAAAGTGACCAAAGATTTATCCAAAACTTAG 1608 0.4353 MGPLTRSIHDPLPKVIIAITLLSTLLSKHLHSTLLELARVSALLLVISIEVLSVIQKWDPIFQLFSLACFFLFFIVKPLLSKPHIYIVDFSCFKPPNCCRVPFSLFLEHASMIESFDSKSIGFMAKLLKSSGQGEQTHLSPALYYIPPITHLQESIKEVHMILFPVMEDLLSKTKLSPQDIDILIVNCTSLCSSPSLSSIIINKYSMRDDIKSFNLSGMGCSAGILGVHLAQNLLKVHKNSYAIVLSTEITSAGWYAGNDKSKLLSNCIFRMGGAAILLTNREEMKKTSKYRLLHTVRIQRAFDDKAYLSTVREEDSNGALGVTFSHDIVQVVSETVRSNITVLGSAILPLLEKFRYRASRFRKRYIQKSAEVYVPDFRRVIQHFVLPASGRSLIIDIGKGLNLGERETEASLMTLRRFGNQSSSSSWYVLAYMEAKERVKKGDKVWQLGMGSGPKCVSFVWECMRPMVEESKKGPWADCIGLRLYSTIPMEHTYSEATGNGICKLLSYLTCEALCLKQNQTTCTKKVTKDLSKT* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0668 535 Pfam FAE1/Type III polyketide synthase-like protein 84 361 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi16g0668 535 SUPERFAMILY Thiolase-like 72 285 IPR016039 GO:0016746
Vvi16g0668 535 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 382 463 IPR013747 -
Vvi16g0668 535 Gene3D - 113 464 IPR016039 GO:0016746
Vvi16g0668 535 CDD CHS_like 86 462 - -
Vvi16g0668 535 PIRSF Very_long_ch_3-ktacl-CoA_syn 11 499 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi16g0668 535 PANTHER 3-KETOACYL-COA SYNTHASE 64 481 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi16g0668 535 SUPERFAMILY Thiolase-like 270 465 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0668 Vvi-Chr16 13660779 13662826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0668 50 481 Miscellaneous Gene Families AT1G25450 46.101 1.19e-144 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0668 K15397 - vvi:100266985 912.524