Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0667 ATGGAACCTGTTTCAAGGCTCAGCCATGATCCTCTTCCGAAAGTAATCACCACCAACACCTTGCCTTCCGGTACTCTCCTCTCAAAGCATCTCCACTCAACCCTTTTGGAGCTAGCAAGGGTTTCTGCTCTTCTACTTGTGATTTCCATTGAAGTTCTTTCCTTTCTACGAGAATGGAACCCCATCTTCCATCTCTTCTCACTCTCTTGTTTCTTTCTGTTTTTCATTGTCAAGCCTCTCCTCTCAAAGCCTCATATCTACATTGTAGACTTCTCATGTTTCAAACCGCCAAACTTTTGCAGAGTTCCCACTTCATCCTTCCTTGAACATTCCTCCATGATTGAGCCCTTTGACAGAAAAGGCATAGATTTCATGGCCAAACTCCTCAAATCTTCGGGACTAGGTGAACAGACCCATCTCTCTCCAGCTTTATTCTACATTCCACCCATTGCCCATCTCCAAGAATCAATCAAAGAAGTCCACATGGTACTGTTCCCTGTAATGGAAGATCTGCTGTCCAAGACTAAACTCTCTCCCCGAGATATCGATATACTAATCATAAACTGTAGTAGTCTTTGCTCGTCTCCTTCCCTCTCCTCCATTATCATCAACAAATACTCCATGAGAGATGATATTAAGAGCTTTAATCTCTCAGGCATGGGGTGCAGTGCTGGAATTCTTAGCACCCATTTGGCTCAAAATCTATTGAAAGTTCACAAGAATTCTTACGCCATTGTTCTTAGCACGGAGATCACATCGGCTGGTTGGTACGCTGGTAACGATAGGTCTAAGTTGCTAGTCAATTGTATCTTTCGAATGGGAGGTGCAGCAATATTGCTTACAAATAAGGAAGAAATGAGAAAAACATCCAAGTATAGGCTACTTCAGACGGTGAGAATACAGAGAGCATTTGACGACAGAGCTTATCTTGCAACAGTTCGCGAAGAGGACTCAAATGGAGCCCTTGGGGTGTCAGTCAGCCACGACTTAGTGCAAGTAGTTGCAGAAACTGTTCGATCGAATATCGCTATCCTCGGCTCATGCATCTTGCCATTCTTGGAGAAATTCAAGTGTGGAGTATCCATGTTCCGGAAGAGATATATTAGCAAATCTGCAGAAGTTTACGTGCCGGATTTTAAGAAAGTGATACAACATTTCGTTCTGCCAGCTTCAGGGAGGTCTTGGATTAGAGAGATAGGAAAAGGGTTGAAGCTTGGCAAGAGAGACACGGAGGCTTCTCTGATGACATTGCGAAGGTTCGGGAACCAGTCTTCATCTTCATCCTGGTATGTATTAGCTTATCTGGAGGCCAAGGAGAGGATGAAGAAGGGTGACAAGGTGTGGCAGCTTGGAATTGGAAGTGGGCCTAAGTGCATTAGTTTTGTCTGGGAGTGTAATAGGCCCATCGTTGGGGAGTCCATGAAGGGCCCATGGGCTGATTGTATCGATGAATATCCAGTCCTTTTTGAGGATGAAAACAATTGA 1485 0.4431 MEPVSRLSHDPLPKVITTNTLPSGTLLSKHLHSTLLELARVSALLLVISIEVLSFLREWNPIFHLFSLSCFFLFFIVKPLLSKPHIYIVDFSCFKPPNFCRVPTSSFLEHSSMIEPFDRKGIDFMAKLLKSSGLGEQTHLSPALFYIPPIAHLQESIKEVHMVLFPVMEDLLSKTKLSPRDIDILIINCSSLCSSPSLSSIIINKYSMRDDIKSFNLSGMGCSAGILSTHLAQNLLKVHKNSYAIVLSTEITSAGWYAGNDRSKLLVNCIFRMGGAAILLTNKEEMRKTSKYRLLQTVRIQRAFDDRAYLATVREEDSNGALGVSVSHDLVQVVAETVRSNIAILGSCILPFLEKFKCGVSMFRKRYISKSAEVYVPDFKKVIQHFVLPASGRSWIREIGKGLKLGKRDTEASLMTLRRFGNQSSSSSWYVLAYLEAKERMKKGDKVWQLGIGSGPKCISFVWECNRPIVGESMKGPWADCIDEYPVLFEDENN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0667 494 PIRSF Very_long_ch_3-ktacl-CoA_syn 17 494 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi16g0667 494 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 383 464 IPR013747 -
Vvi16g0667 494 SUPERFAMILY Thiolase-like 271 465 IPR016039 GO:0016746
Vvi16g0667 494 CDD CHS_like 87 463 - -
Vvi16g0667 494 SUPERFAMILY Thiolase-like 73 287 IPR016039 GO:0016746
Vvi16g0667 494 Gene3D - 136 464 IPR016039 GO:0016746
Vvi16g0667 494 Pfam FAE1/Type III polyketide synthase-like protein 85 366 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi16g0667 494 PANTHER 3-KETOACYL-COA SYNTHASE 66 487 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0667 Vvi-Chr16 13649610 13651094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0667 51 491 Miscellaneous Gene Families AT1G25450 46.953 2.19e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0667 K15397 - vvi:100244664 935.25