Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0664 ATGGCAGTAGCCAGAGAAGTGGGGTTTTTTTGTGGTTCAGATGGAGGAAGAGGACAAGTAGGTCTGGAAGGCTTTAAAAAAGGCGTCCTCATCATTGGTTCTGAAAGTGCCACTCACAATCTGAGGGCCCTCAATCCCAATAGTGAATCGGTTGTGCCTTGGGCATATGATCAGTTTGATACCTGGTTGAAAGAAACTCTCCTTGATGGAAGATATGAAGACATAAATCACTATGAAAAGAAGACACCGCATGCCAGAGAGGCCCACCCATGGCAGGAACACTTCTATCCATTGCATGTAGCCATGGGTGCTGCTGGCGAAAATGCAAAGGCCAAACTCATCCACTATAGTTGGAGCCTCGGTACTCTCTCTTATGCCTCTTACCAGTTCACAACAACAGCCACCTAA 408 0.4681 MAVAREVGFFCGSDGGRGQVGLEGFKKGVLIIGSESATHNLRALNPNSESVVPWAYDQFDTWLKETLLDGRYEDINHYEKKTPHAREAHPWQEHFYPLHVAMGAAGENAKAKLIHYSWSLGTLSYASYQFTTTAT* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0664 135 SUPERFAMILY LigB-like 26 130 - -
Vvi16g0664 135 CDD 45_DOPA_Dioxygenase 26 130 IPR014436 GO:0008270|GO:0016701
Vvi16g0664 135 Gene3D - 20 131 - -
Vvi16g0664 135 Pfam Catalytic LigB subunit of aromatic ring-opening dioxygenase 25 130 IPR004183 GO:0006725|GO:0008198|GO:0016491
Vvi16g0664 135 PANTHER UNCHARACTERIZED 26 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0664 Vvi-Chr16 13606221 13606881 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0664 K15777 - vvi:100262346 211.846