Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0658 ATGACGAGATTCTCCAGTGCCAACCGCTTCCGCTTCCAGTTCTCCATCTCCAAATATGCGTTCTGGTGGTGCCTATTCTTCATTGTGCTCCTGTGCTTCGTAAGCAACCACTTGCTGCTGTCCGACAACGACAGGCGTCTCCTCCGGAACAGAGGGAAGGGGTGGGAACAGCGGGTCCTGTCGTCGGCGAGCCCCCGCTCCAGTACCGGCTCCACGGTGCTCGTCACCGGCGCAGCCGGCTTCATTGGCTCTCATGTCTCCGCCGCCCTGAGGAACCGCGGCGACGGCGTGGTGGGACTGGACAACTTCAACAACTATTACGATGTATCATTGAAGCATGACCGGCGAGCAATGCTGGAGAGCTCCGGCGTGTTCATCGTCGACGGCGATATCAACGACCAGGTGCTTCTCAAGAAGCTTTTCAGCATTGTTCAATTCACTCACGTAATGCACCTCGCGGCTCAGGCCGGCGTGAGGTATGCAATGAAGAACCCAGCTTCCTATATCGATAGCAACCTCTCTGGTTTTGTGAACTTGCTTGAAGTCTGCAAAGAGGCTAAACCACAGCCAGCCATTATCTGGGCATCCTCTAGCTCGGTATATGGACTCAATTCTAAGGTTCCCTTCTCCGAAACCGATCGAACAGACCAGCCTGCAAGTCTCTATGCTGCAACAAAGAAGGCTGGTGAAGAGATTGCACATAGCTATAATCACATCTACGGTTTATCGATCACCGGGTTGCGGTTTTTCACAGTATATGGACCTTGGGGGAGGCCTGATATGGCCTATTTCTTCTTCACCAAGGATATATTGCAGGGAAATTCGATACGAATTTTTGAGGGTGGTAAAGGAGGGGTAGTTGCAAGGGATTTTACCTACATTGATGATATAGTAAAGGGTTGTTTGGCAGCATTGGATACTGCAGAGAAGAGTACTGGGAGTGGGGGAAAGAAGATGAGGCCAGCCCAGTTAAGAGTGTATAATCTTGGGAACACATCTCCAGTGGAAGTAGGGAGCCTTGTAAGCATATTGGAGAGGTTGTTGAAGGTGAAAGCCAGGCGAGTTGCAACGCCAATGCCCAGGAACGGGGATGTGATGTATACACATGCGAATATAAGTTTGGCAGAGAAGGAGCTTGGATACAAGCCCACTACAGATTTGAGGAGTGGGTTGGAGAAATTTGTCAAGTGGTACCTCACTTACTATAATCAATCCACTGTAAATTAA 1227 0.5029 MTRFSSANRFRFQFSISKYAFWWCLFFIVLLCFVSNHLLLSDNDRRLLRNRGKGWEQRVLSSASPRSSTGSTVLVTGAAGFIGSHVSAALRNRGDGVVGLDNFNNYYDVSLKHDRRAMLESSGVFIVDGDINDQVLLKKLFSIVQFTHVMHLAAQAGVRYAMKNPASYIDSNLSGFVNLLEVCKEAKPQPAIIWASSSSVYGLNSKVPFSETDRTDQPASLYAATKKAGEEIAHSYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKDILQGNSIRIFEGGKGGVVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKMRPAQLRVYNLGNTSPVEVGSLVSILERLLKVKARRVATPMPRNGDVMYTHANISLAEKELGYKPTTDLRSGLEKFVKWYLTYYNQSTVN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0658 408 PRINTS Nucleotide sugar epimerase signature 364 381 - -
Vvi16g0658 408 PRINTS Nucleotide sugar epimerase signature 99 115 - -
Vvi16g0658 408 PRINTS Nucleotide sugar epimerase signature 324 339 - -
Vvi16g0658 408 PRINTS Nucleotide sugar epimerase signature 289 304 - -
Vvi16g0658 408 Gene3D - 71 404 - -
Vvi16g0658 408 PANTHER EPIMERASE-RELATED 55 404 - -
Vvi16g0658 408 Pfam NAD dependent epimerase/dehydratase family 73 310 IPR001509 -
Vvi16g0658 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 403 IPR036291 -
Vvi16g0658 408 FunFam UDP-glucuronate 4-epimerase 3 72 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0658 Vvi-Chr16 13468258 13469484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0658 8 404 Miscellaneous Gene Families AT1G02000 72.569 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0658 K08679 - vvi:100242871 810.446